RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Card6E9PWH2 1175 aa19.37■□□□□ 0.69
Shh-201ENSMUST00000002708 Cfap157Q0VFX2 523 aa19.37■□□□□ 0.69
Shh-201ENSMUST00000002708 Iffo2Q8R2V2 512 aa19.37■□□□□ 0.69
Shh-201ENSMUST00000002708 Ercc3P49135 783 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Rab3gap1Q80UJ7 981 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Ano1Q8BHY3 960 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Nek11Q8C0Q4 628 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Irx4Q9QY61 515 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Tiam2Q6ZPF3 1715 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Prl3d3A0A0M6L0J6 224 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Fam84aQ9D650 292 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Sh3bgrQ9WUZ7 214 aa19.36■□□□□ 0.69
Shh-201ENSMUST00000002708 Ppp6r1Q7TSI3 856 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Lrrfip2Q91WK0 415 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Cnpy2Q9QXT0 182 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Hmg20bQ9Z104 317 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Scn4aQ9ER60 1841 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 RubcnlQ3TD16 648 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Atg9aQ68FE2 551 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Kiaa0754Q69ZZ9 979 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Golim4Q8BXA1 655 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 Cep57l1Q8VDS7 400 aa19.35■□□□□ 0.69
Shh-201ENSMUST00000002708 1700113H08RikE9Q9Q5 327 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Zfp317Q8C0Q5 607 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Cwc25Q9DBF7 416 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Stard3nlQ9DCI3 235 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Krt85Q9Z2T6 507 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Aox1O54754 1333 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Rassf8Q8CJ96 419 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Pcdhb15Q91Y04 786 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Ltb4r2Q9JJL9 360 aa19.34■□□□□ 0.69
Shh-201ENSMUST00000002708 Irgm2A0A140LIF8 407 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Ccdc129Q14B48 1034 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Nlrp1aQ2LKU9 1182 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Usp28Q5I043 1051 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Ppp4r3aQ6P2K6 820 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Bcl9lQ67FY2 1494 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Mb21d2Q8C525 428 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Sh3bp5Q9Z131 463 aa19.33■□□□□ 0.69
Shh-201ENSMUST00000002708 Cspp1B2RX88 1205 aa19.33■□□□□ 0.68
Shh-201ENSMUST00000002708 Myd88P22366 296 aa19.33■□□□□ 0.68
Shh-201ENSMUST00000002708 Ltv1Q6NSQ7 470 aaKnown RBP19.33■□□□□ 0.68
Shh-201ENSMUST00000002708 Lmbrd2Q8C561 694 aa19.33■□□□□ 0.68
Shh-201ENSMUST00000002708 Prl7a2O54831 253 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 NfkbibQ60778 359 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Ccz1Q8C1Y8 480 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Tmc2Q8R4P4 888 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 AK157302I3ITR1 129 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Stat1P42225 749 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Tnnt2P50752 301 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Igflr1Q3U4N7 345 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Ttc27Q8CD92 847 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Nop14Q8R3N1 860 aaKnown RBP19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Tlcd1Q99JT6 247 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Isca1Q9D924 129 aa19.32■□□□□ 0.68
Shh-201ENSMUST00000002708 Cct2P80314 535 aaKnown RBP19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Tsen34Q8BMZ5 316 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Gm973E9Q295 1059 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Ap5z1Q3U829 807 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Ankib1Q6ZPS6 1085 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Ttc19Q8CC21 365 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Srgap1Q91Z69 1062 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Syt10Q9R0N4 523 aa19.31■□□□□ 0.68
Shh-201ENSMUST00000002708 Cyp2d10P24456 504 aa19.3■□□□□ 0.68
Shh-201ENSMUST00000002708 Atp1a3Q6PIC6 1013 aa19.3■□□□□ 0.68
Shh-201ENSMUST00000002708 Bmp2kQ91Z96 1138 aa19.3■□□□□ 0.68
Shh-201ENSMUST00000002708 Ifi35Q9D8C4 286 aa19.3■□□□□ 0.68
Shh-201ENSMUST00000002708 Plcd3Q8K2J0 785 aa19.3■□□□□ 0.68
Shh-201ENSMUST00000002708 Atp8b3Q6UQ17 1335 aa19.3■□□□□ 0.68
Shh-201ENSMUST00000002708 Adam1aQ60813 791 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 AtrnQ9WU60 1428 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Kiaa0753Q6A000 959 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Usp44Q8C2S0 711 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Erc1Q99MI1 1120 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Ric1Q69ZJ7 1422 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Csrnp1P59054 583 aa19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Ppp1r10Q80W00 888 aaKnown RBP19.29■□□□□ 0.68
Shh-201ENSMUST00000002708 Ptcd1Q8C2E4 695 aaKnown RBP19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 Ccdc158Q8CDI6 1109 aa19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 Aox4Q3TYQ9 1336 aa19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 Prl3d2F6R3P9 224 aa19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 Ubap1lG3UW59 384 aa19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 Nfatc2ipO09130 412 aa19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 TfrcQ62351 763 aaKnown RBP19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 Rbm17Q8JZX4 405 aaKnown RBP19.28■□□□□ 0.68
Shh-201ENSMUST00000002708 RdxP26043 583 aaKnown RBP19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 HdgfP51859 237 aaKnown RBP19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 ZyxQ62523 564 aa19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 Nxf7Q80SZ6 620 aaKnown RBP19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 Smc4Q8CG47 1286 aa19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 Dnajc14Q921R4 703 aa19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 Cap2Q9CYT6 476 aa19.27■□□□□ 0.68
Shh-201ENSMUST00000002708 Eya2O08575 532 aa19.27■□□□□ 0.67
Shh-201ENSMUST00000002708 Cdkn1cP49919 348 aa19.27■□□□□ 0.67
Shh-201ENSMUST00000002708 Cadps2Q8BYR5 1297 aa19.27■□□□□ 0.67
Shh-201ENSMUST00000002708 Fam213aQ9CYH2 218 aa19.27■□□□□ 0.67
Shh-201ENSMUST00000002708 Klhl34A2AI76 644 aa19.26■□□□□ 0.67
Shh-201ENSMUST00000002708 Cdk4P30285 303 aa19.26■□□□□ 0.67
Shh-201ENSMUST00000002708 BcanQ61361 883 aa19.26■□□□□ 0.67
Shh-201ENSMUST00000002708 Ncoa5Q91W39 579 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 22,080 RNA–protein pairs in 32.7 ms