RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SPHK2Q9NRA0 654 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 CHRNA9Q9UGM1 479 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 CES1P1Q9UKY3 287 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 ATG4BQ9Y4P1 393 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 KPTNQ9Y664 436 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 TRBV6-7A0A0A0MS04 114 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 TVP23AA6NH52 213 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 RNASEK-C17orf49H0YIS7 233 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 AP4M1O00189 453 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 NDUFB2O95178 105 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CD2P06729 351 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 NID1P14543 1247 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MUC1P15941 1255 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CSRP1P21291 193 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CPT2P23786 658 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 GLP1RP43220 463 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 DHCR24Q15392 516 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ITPRIPL2Q3MIP1 535 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 YOD1Q5VVQ6 348 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 FAHD2BQ6P2I3 314 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 TMEM25Q86YD3 366 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF619Q8N2I2 560 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 RAB42Q8N4Z0 105 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ACOT4Q8N9L9 421 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 SLC16A11Q8NCK7 471 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 OR10R2Q8NGX6 335 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 OR4K13Q8NH42 304 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 TMED6Q8WW62 240 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 DVL3Q92997 716 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CCDC74AQ96AQ1 378 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 FAHD2AQ96GK7 314 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 SEC22AQ96IW7 307 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 TNFRSF13CQ96RJ3 184 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 UCK1Q9HA47 277 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MDC1Q14676 2089 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 BLOC1S5-TXNDC5H3BN57 136 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ERI3O43414 337 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CYB5AP00167 134 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ADH5P11766 374 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 PGAM2P15259 253 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 HIST1H1CP16403 213 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MAOAP21397 527 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 RPS4Y1P22090 263 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 AK4P27144 223 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 PSMB6P28072 239 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 TSFMP43897 325 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 F2RL1P55085 397 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CSNK1G2P78368 415 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CYCSP99999 105 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ALKBH1Q13686 389 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 RBM39Q14498 530 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MEF2DQ14814 521 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MRPL2Q5T653 305 aaKnown RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MITD1Q8WV92 249 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 DTD2Q96FN9 168 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 SMIM8Q96KF7 97 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CLCC1Q96S66 551 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 PRRT1Q99946 306 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 OCSTAMPQ9BR26 566 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF559Q9BR84 538 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CHRDQ9H2X0 955 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 MEPEQ9NQ76 525 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-212ENST00000619079 CA14Q9ULX7 337 aa9.82□□□□□ -0.84
UPF3A-212ENST00000619079 LOC100289279A0A1B0GTE1 492 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 OTOL1A6NHN0 477 aaPredicted RBP9.81□□□□□ -0.84
UPF3A-212ENST00000619079 IDSB3KWA1 339 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF736B4DX44 427 aaPredicted RBP9.81□□□□□ -0.84
UPF3A-212ENST00000619079 IL2RAP01589 272 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 OR8U8P0C7N1 319 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 FAM157CP0CG43 387 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF684Q5T5D7 378 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 SLC25A42Q86VD7 318 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 OR51L1Q8NGJ5 315 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 OR5K2Q8NHB8 316 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 CPNE2Q96FN4 548 aaPredicted RBP9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF681Q96N22 645 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 SDF2Q99470 211 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 MICU1Q9BPX6 476 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF350Q9GZX5 532 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ADAM19Q9H013 955 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 COMMD4Q9H0A8 199 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 CHMP1AQ9HD42 196 aaPredicted RBP9.81□□□□□ -0.84
UPF3A-212ENST00000619079 SDHAF3Q9NRP4 125 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 FBXO4Q9UKT5 387 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 PCDHGA1Q9Y5H4 931 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 PIAS3Q9Y6X2 628 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 TRBV5-7A0A0A0MS05 114 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 MEIS3P1A6NDR6 274 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 CCSO14618 274 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 PPM1DO15297 605 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 MAS1P04201 325 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 CD5P06127 495 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ZBTB25P24278 435 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 MAGEB1P43366 347 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 PPICP45877 212 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 SOX2P48431 317 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 POU3F4P49335 361 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 RAB11BQ15907 218 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF124Q15973 351 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 MST1LQ2TV78 715 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms