RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZNF813Q6ZN06 617 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 OR6V1Q8N148 313 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 NABP1Q96AH0 204 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 SLC17A5Q9NRA2 495 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 TVP23BQ9NYZ1 205 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 NDRG4Q9ULP0 352 aaKnown RBP17.27■□□□□ 0.36
UPF3A-211ENST00000618700 B9D1Q9UPM9 204 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 ICE1Q9Y2F5 2266 aa17.27■□□□□ 0.35
UPF3A-211ENST00000618700 M0R129 80 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 PRKYO43930 277 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 KHDRBS3O75525 346 aaKnown RBP17.26■□□□□ 0.35
UPF3A-211ENST00000618700 PPP3CBP16298 524 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 CDAP32320 146 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 GGT2P36268 569 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 MRPS34P82930 218 aaKnown RBP17.26■□□□□ 0.35
UPF3A-211ENST00000618700 DBPQ10586 325 aaPredicted RBP17.26■□□□□ 0.35
UPF3A-211ENST00000618700 SNTB1Q13884 538 aaKnown RBP17.26■□□□□ 0.35
UPF3A-211ENST00000618700 SNAPC1Q16533 368 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 TBRG1Q3YBR2 411 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 HIKESHIQ53FT3 197 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 TIMM23BQ5SRD1 257 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 KLHL24Q6TFL4 600 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 C22orf34Q6ZV56 151 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 P2RY8Q86VZ1 359 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 DMRTC2Q8IXT2 367 aaPredicted RBP17.26■□□□□ 0.35
UPF3A-211ENST00000618700 HCAR1Q9BXC0 346 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 VCXQ9H320 206 aa17.26■□□□□ 0.35
UPF3A-211ENST00000618700 HINT3Q9NQE9 182 aaKnown RBP17.26■□□□□ 0.35
UPF3A-211ENST00000618700 ARPC4-TTLL3A0A0A6YYG9 625 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 FAM183AA6NL82 134 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 GAAP10253 952 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 C1QTNF12Q5T7M4 302 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 SEZ6L2Q6UXD5 910 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 SLC22A24Q8N4F4 322 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 WDR31Q8NA23 367 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 OR9Q1Q8NGQ5 310 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 OR2T4Q8NH00 348 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 PLEKHA8Q96JA3 519 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 WFIKKN1Q96NZ8 548 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 FAM118AQ9NWS6 357 aa17.25■□□□□ 0.35
UPF3A-211ENST00000618700 COA3Q9Y2R0 106 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-211ENST00000618700 A0A096LPE4 126 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 A0A1W2PPZ6 126 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SH3D21A4FU49 640 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 PRR23D1E9PI22 279 aaPredicted RBP17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SLC16A6O15403 523 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 THBDP07204 575 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 PRR23D2P0DMB1 279 aaPredicted RBP17.24■□□□□ 0.35
UPF3A-211ENST00000618700 CLUP10909 449 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SPI1P17947 270 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 NPR2P20594 1047 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 PAICSP22234 425 aaKnown RBP17.24■□□□□ 0.35
UPF3A-211ENST00000618700 LAP3P28838 519 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 PTDSS1P48651 473 aaKnown RBP17.24■□□□□ 0.35
UPF3A-211ENST00000618700 TAB1Q15750 504 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 GLB1L2Q8IW92 636 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 LINC01560Q8TB33 94 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 HSD17B8Q92506 261 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 HTRA1Q92743 480 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 PTP4A1Q93096 173 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SPOCK3Q9BQ16 436 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 RERGLQ9H628 205 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 MED20Q9H944 212 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SIAEQ9HAT2 523 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SRA1Q9HD15 236 aaKnown RBP17.24■□□□□ 0.35
UPF3A-211ENST00000618700 OBP2BQ9NPH6 170 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 POLE4Q9NR33 117 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 ZNF224Q9NZL3 707 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 NDRG3Q9UGV2 375 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 SLC25A15Q9Y619 301 aa17.24■□□□□ 0.35
UPF3A-211ENST00000618700 A0A1W2PPL8 197 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 TUBAL3A6NHL2 446 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 H0YJX3 145 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 SCG5P05408 212 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 OR8G3PP0DMU2 310 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 PYCR1P32322 319 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 CDC42P60953 191 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 FBXW10Q5XX13 1052 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 PLBD1Q6P4A8 553 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 MEX3BQ6ZN04 569 aaKnown RBP17.23■□□□□ 0.35
UPF3A-211ENST00000618700 CXXC5Q7LFL8 322 aaKnown RBP17.23■□□□□ 0.35
UPF3A-211ENST00000618700 CPOQ8IVL8 374 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 CCDC36Q8IYA8 594 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 TCEANCQ8N8B7 351 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 PROKR2Q8NFJ6 384 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 FAM81AQ8TBF8 368 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 TMEM163Q8TC26 289 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 ZNRF4Q8WWF5 429 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 DACH2Q96NX9 599 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 FOXN4Q96NZ1 517 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 MED18Q9BUE0 208 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 VCX3BQ9H321 246 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 AMDHD2Q9Y303 409 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 HECTD1Q9ULT8 2610 aa17.23■□□□□ 0.35
UPF3A-211ENST00000618700 LOC100130705A0A1B0GUX0 176 aa17.22■□□□□ 0.35
UPF3A-211ENST00000618700 ZNF503-AS2A6NEH8 195 aa17.22■□□□□ 0.35
UPF3A-211ENST00000618700 GYPBP06028 91 aa17.22■□□□□ 0.35
UPF3A-211ENST00000618700 MSR1P21757 451 aa17.22■□□□□ 0.35
UPF3A-211ENST00000618700 HOXC12P31275 282 aa17.22■□□□□ 0.35
UPF3A-211ENST00000618700 KIR2DL3P43628 341 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms