RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 HCAR1Q9BXC0 346 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 DGCR6LQ9BY27 220 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 ITGB1BP2Q9UKP3 347 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 RNF115Q9Y4L5 304 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 A0A1W2PPL8 197 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 E7EQL1 145 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 SLC16A7O60669 478 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 GYPBP06028 91 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 LAP3P28838 519 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 UBE2NP61088 152 aaKnown RBP11.71□□□□□ -0.53
LINC00540-202ENST00000616974 RAB39AQ14964 217 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 SGCAQ16586 387 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 PGGHGQ32M88 737 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 ACSM5Q6NUN0 579 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 LEG1Q6P5S2 330 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 RASSF6Q6ZTQ3 369 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 P2RY8Q86VZ1 359 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 BOD1Q96IK1 185 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 TSSK6Q9BXA6 273 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 MED20Q9H944 212 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 SLC24A3Q9HC58 644 aa11.71□□□□□ -0.53
LINC00540-202ENST00000616974 RPRD1BQ9NQG5 326 aaKnown RBP11.71□□□□□ -0.53
LINC00540-202ENST00000616974 COA3Q9Y2R0 106 aaPredicted RBP11.71□□□□□ -0.53
LINC00540-202ENST00000616974 NF1P21359 2839 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 ARPC4-TTLL3A0A0A6YYG9 625 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 HTR3EA5X5Y0 456 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 SAC3D1A6NKF1 404 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 FAM183AA6NL82 134 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 CIB2O75838 187 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 TXNDC12O95881 172 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 IGLV1-44P01699 117 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 MMP7P09237 267 aaPredicted RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF14P17017 642 aaPredicted RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 POU1F1P28069 291 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 HOXC12P31275 282 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 RAB1AP62820 205 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 ATP6AP1Q15904 470 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 SLC22A25Q6T423 547 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 CDH24Q86UP0 819 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 NPEPL1Q8NDH3 523 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 CPEB3Q8NE35 698 aaKnown RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 OR52E2Q8NGJ4 325 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 OR9Q1Q8NGQ5 310 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 DUS3LQ96G46 650 aaKnown RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 SLC38A2Q96QD8 506 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 DDOQ99489 341 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 ESRP2Q9H6T0 727 aaKnown RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 SRA1Q9HD15 236 aaKnown RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 B3GAT2Q9NPZ5 323 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 ST6GALNAC2Q9UJ37 374 aa11.71□□□□□ -0.54
LINC00540-202ENST00000616974 NSD1Q96L73 2696 aaPredicted RBP11.71□□□□□ -0.54
LINC00540-202ENST00000616974 ERICH4A6NGS2 130 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 CD3EP07766 207 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 SLC6A6P31641 620 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 POLR2IP36954 125 aaKnown RBP11.7□□□□□ -0.54
LINC00540-202ENST00000616974 SH3BGRP55822 239 aaPredicted RBP11.7□□□□□ -0.54
LINC00540-202ENST00000616974 ENDOGQ14249 297 aaKnown RBP11.7□□□□□ -0.54
LINC00540-202ENST00000616974 ANKDD1AQ495B1 522 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 AKR7LQ8NHP1 331 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 RADILQ96JH8 1075 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF416Q9BWM5 594 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 OR51B6Q9H340 312 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 KRCC1Q9NPI7 259 aaPredicted RBP11.7□□□□□ -0.54
LINC00540-202ENST00000616974 TBC1D23Q9NUY8 699 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 AMDHD2Q9Y303 409 aa11.7□□□□□ -0.54
LINC00540-202ENST00000616974 XKRYO14609 159 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 NDUFS7O75251 213 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ATE1O95260 518 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CD8AP01732 235 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF32P17041 273 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CD53P19397 219 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ANOS1P23352 680 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 PYCR1P32322 319 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 NAAAQ02083 359 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 HGFACQ04756 655 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 GSG1Q2KHT4 349 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 SHQ1Q6PI26 577 aaKnown RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 PAMR1Q6UXH9 720 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ICA1LQ8NDH6 482 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 SLC7A6Q92536 515 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ALG12Q9BV10 488 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 VSX1Q9NZR4 365 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CRNNQ9UBG3 495 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 TMEFF2Q9UIK5 374 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 OAZ3Q9UMX2 235 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 MGAT4BQ9UQ53 548 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 LAMP3Q9UQV4 416 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CUBNO60494 3623 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 IGLV1-36A0A0B4J1U3 117 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 IGHV2OR16-5A0A0B4J2B6 119 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 H3BN98 237 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ARPC3O15145 178 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 DEAF1O75398 565 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 OR8G3PP0DMU2 310 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF23P17027 643 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 IFNGR2P38484 337 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CDH11P55287 796 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CRMP1Q14194 572 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ZSCAN26Q16670 478 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms