RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 SAR1AQ9NR31 198 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 MRGBPQ9NV56 204 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 HIF1ANQ9NWT6 349 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 GID8Q9NWU2 228 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 SLCO1C1Q9NYB5 712 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 NKIRAS2Q9NYR9 191 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 TREM2Q9NZC2 230 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 STX18Q9P2W9 335 aaKnown RBP6.51□□□□□ -1.37
CUX1-219ENST00000606749 MED31Q9Y3C7 131 aa6.51□□□□□ -1.37
CUX1-219ENST00000606749 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.51□□□□□ -1.37
CUX1-219ENST00000606749 LOC100509620A0A075B734 347 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 HTR3EA5X5Y0 456 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 NPIPB13A6NJU9 1138 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 BBIP1A8MTZ0 92 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 FAM220BPB1ANY3 271 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 NPIPB4C9JG80 1138 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 TCF21O43680 179 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 PIP5K1CO60331 668 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 CDC14BO60729 498 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 SASH3O75995 380 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 SLC2A10O95528 541 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 IGHV3-13P01766 116 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 TFP02787 698 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 MSMBP08118 114 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 TROVE2P10155 538 aaKnown RBP eCLIP6.5□□□□□ -1.37
CUX1-219ENST00000606749 ZNF32P17041 273 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 PCMT1P22061 227 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 FUT4P22083 530 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 STOMP27105 288 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 APLNRP35414 380 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 CRYBB2P43320 205 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 ARFIP2P53365 341 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 PSG4Q00888 419 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 HSF2Q03933 536 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 ST3GAL3Q11203 375 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 SF3A3Q12874 501 aaKnown RBP eCLIP6.5□□□□□ -1.37
CUX1-219ENST00000606749 TAF11Q15544 211 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 SGCAQ16586 387 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 MOGQ16653 247 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 PCGF3Q3KNV8 242 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 CYBRD1Q53TN4 286 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 THEM4Q5T1C6 240 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 FAM27BQ5VT28 67 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 TMEM154Q6P9G4 183 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 SLC25A47Q6Q0C1 308 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 GLCCI1Q86VQ1 547 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 MICU2Q8IYU8 434 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 PCYOX1LQ8NBM8 494 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 ICA1LQ8NDH6 482 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 OR1J1Q8NGS3 322 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 AKR7LQ8NHP1 331 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 NSMAFQ92636 917 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 GTF3AQ92664 365 aaKnown RBP6.5□□□□□ -1.37
CUX1-219ENST00000606749 NABP1Q96AH0 204 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 TMEM186Q96B77 213 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 BPIFA2Q96DR5 249 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 TPD52L3Q96J77 140 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 POM121L2Q96KW2 1035 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 LRRC37BQ96QE4 947 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 SMURF2Q9HAU4 748 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 CCNB1IP1Q9NPC3 277 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 FGFR1OP2Q9NVK5 253 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 ARGLU1Q9NWB6 273 aaPredicted RBP6.5□□□□□ -1.37
CUX1-219ENST00000606749 EIF3KQ9UBQ5 218 aaKnown RBP6.5□□□□□ -1.37
CUX1-219ENST00000606749 METRNQ9UJH8 293 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 A4GNTQ9UNA3 340 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 HIF3AQ9Y2N7 669 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 UGT2A1Q9Y4X1 527 aa6.5□□□□□ -1.37
CUX1-219ENST00000606749 IGHV1-69-2A0A0G2JMI3 117 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 ELOVL7A1L3X0 281 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 IGHMP01871 453 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 MT-ND5P03915 603 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 IFI30P13284 250 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 ANPEPP15144 967 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 ITGA2P17301 1181 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 MAKP20794 623 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 CCNOP22674 350 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 WNT5AP41221 380 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 YAP1P46937 504 aaKnown RBP6.49□□□□□ -1.37
CUX1-219ENST00000606749 CTXN1P60606 82 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 RPL27P61353 136 aaKnown RBP6.49□□□□□ -1.37
CUX1-219ENST00000606749 ERVK-25P63136 954 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 TEKQ02763 1124 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 MVKQ03426 396 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 PRKCDQ05655 676 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 FMODQ06828 376 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 CD47Q08722 323 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 FHL1Q13642 323 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 MAPRE2Q15555 327 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 ZNF718Q3SXZ3 478 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 LRRC23Q53EV4 343 aaPredicted RBP6.49□□□□□ -1.37
CUX1-219ENST00000606749 ALG10Q5BKT4 473 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 TMEM255AQ5JRV8 349 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 AVPI1Q5T686 147 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 CGB2Q6NT52 195 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 ACSM5Q6NUN0 579 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 RINLQ6ZS11 566 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 ZNF101Q8IZC7 436 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 CLDN22Q8N7P3 220 aa6.49□□□□□ -1.37
CUX1-219ENST00000606749 LRRC75AQ8NAA5 344 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms