RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 OR8G3PP0DMU2 310 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 HIST1H1CP16403 213 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 SLC6A6P31641 620 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 ARR3P36575 388 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 HGFACQ04756 655 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 PIGFQ07326 219 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 GSG1Q2KHT4 349 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 ADCK1Q86TW2 530 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 PIAS4Q8N2W9 510 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 FNDC8Q8TC99 324 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 GIPC3Q8TF64 312 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 GTPBP3Q969Y2 492 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 MS4A3Q96HJ5 214 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 RADILQ96JH8 1075 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 ERMAPQ96PL5 475 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 SYT4Q9H2B2 425 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 SIAEQ9HAT2 523 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 ARFGEF3Q5TH69 2177 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 IGHV2OR16-5A0A0B4J2B6 119 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 CD79AP11912 226 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 GIPRP48546 466 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 ZNF84P51523 738 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 IDH3GP51553 393 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 RPS6KA3P51812 740 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 CDH11P55287 796 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 RAB1AP62820 205 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 ENDOGQ14249 297 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 DEFB113Q30KQ7 82 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 FAM27BQ5VT28 67 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 C11orf71Q6IPW1 123 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 FBXO17Q96EF6 278 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 TSSK2Q96PF2 358 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 RBP7Q96R05 134 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 SNX18Q96RF0 628 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 FOXC2Q99958 501 aa16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 DENND2DQ9H6A0 471 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 MOV10Q9HCE1 1003 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 CISD1Q9NZ45 108 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 PDP1Q9P0J1 537 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-221ENST00000599833 IGLV1-36A0A0B4J1U3 117 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 OVOL3O00110 214 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 UBL3O95164 117 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 SOX14O95416 240 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 ZNF35P13682 527 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 NPR2P20594 1047 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 PRKACGP22612 351 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 ACTR3P61158 418 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 ATP6AP1Q15904 470 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 CLEC12AQ5QGZ9 265 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 SHQ1Q6PI26 577 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 SLC22A25Q6T423 547 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 UGT2A3Q6UWM9 527 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 DTX2Q86UW9 622 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 NPEPL1Q8NDH3 523 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 FBXW5Q969U6 566 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 IFT27Q9BW83 186 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 NDEL1Q9GZM8 345 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 NUAK2Q9H093 628 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 YY1AP1Q9H869 796 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 POLE4Q9NR33 117 aa16.9■□□□□ 0.3
SHKBP1-221ENST00000599833 OR6C68A6NDL8 312 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 H3BNX3 289 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 XKRYO14609 159 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 IDH3BO43837 385 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 GAAP10253 952 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 NR2C1P13056 603 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 PAX1P15863 534 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 GSTM3P21266 225 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 DNASE1P24855 282 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 CAPZA2P47755 286 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 PTDSS1P48651 473 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 NKX6-1P78426 367 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 NPRL3Q12980 569 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 KEAP1Q14145 624 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 RAB39AQ14964 217 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 KPNB1Q14974 876 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 RPL13AP3Q6NVV1 102 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 YTHDF3Q7Z739 585 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 OR6V1Q8N148 313 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 LNX2Q8N448 690 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 SMAP2Q8WU79 429 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 NMNAT3Q96T66 252 aa16.89■□□□□ 0.29
SHKBP1-221ENST00000599833 SLC16A7O60669 478 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 DEAF1O75398 565 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 GPANK1O95872 356 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 SERPINA5P05154 406 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 CST2P09228 141 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 ZNF32P17041 273 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 LAP3P28838 519 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 COX10Q12887 443 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 MSMPQ1L6U9 139 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 OTPQ5XKR4 325 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 FAHD1Q6P587 224 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 LEG1Q6P5S2 330 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 SLC16A14Q7RTX9 510 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 ZBTB46Q86UZ6 589 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 LRRC18Q8N456 261 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 PAQR4Q8N4S7 273 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 OR4K13Q8NH42 304 aa16.88■□□□□ 0.29
SHKBP1-221ENST00000599833 ZNRF4Q8WWF5 429 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms