RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 RRM2BQ7LG56 351 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 IGFN1Q86VF2 1251 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 RBM15BQ8NDT2 890 aaKnown RBP12.95□□□□□ -0.34
LIG1-215ENST00000597901 CPEB3Q8NE35 698 aaKnown RBP12.95□□□□□ -0.34
LIG1-215ENST00000597901 OR1J2Q8NGS2 313 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 ALG12Q9BV10 488 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 BPESC1Q9GZL8 116 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 LRMDAQ9H2I8 198 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 TPK1Q9H3S4 243 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 CDH20Q9HBT6 801 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 MYEF2Q9P2K5 600 aaKnown RBP12.95□□□□□ -0.34
LIG1-215ENST00000597901 EGFL7Q9UHF1 273 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 ABCA1O95477 2261 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 ARFGEF3Q5TH69 2177 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 LYNX1G3V0Z9 82 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 M0R233 179 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 IGHMP01871 453 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 LYNX1P0DP58 116 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 NR2C1P13056 603 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 APEHP13798 732 aaKnown RBP12.94□□□□□ -0.34
LIG1-215ENST00000597901 ZNF23P17027 643 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 COL8A2P25067 703 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 RAD52P43351 418 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 ALDH3B1P43353 468 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 SLC9A3P48764 834 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 UCP2P55851 309 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 MAD2L1BPQ15013 274 aaPredicted RBP12.94□□□□□ -0.34
LIG1-215ENST00000597901 TBC1D28Q2M2D7 210 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 CHRFAM7AQ494W8 412 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 PABPC1L2AQ5JQF8 200 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 RGS7BPQ6MZT1 257 aaPredicted RBP12.94□□□□□ -0.34
LIG1-215ENST00000597901 CXXC5Q7LFL8 322 aaKnown RBP12.94□□□□□ -0.34
LIG1-215ENST00000597901 CYP4Z1Q86W10 505 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 CLDN22Q8N7P3 220 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 ARIH2OSQ8N7S6 290 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 FNDC8Q8TC99 324 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 NABP1Q96AH0 204 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 TSPAN32Q96QS1 320 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 ANKRD19PQ9H560 264 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 SPAG4Q9NPE6 437 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 DCAF13Q9NV06 445 aaKnown RBP12.94□□□□□ -0.34
LIG1-215ENST00000597901 ADA2Q9NZK5 511 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 RPS6KA6Q9UK32 745 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 CR1P17927 2039 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 JMJD1CQ15652 2540 aa12.94□□□□□ -0.34
LIG1-215ENST00000597901 LOC100289279A0A1B0GTE1 492 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 A6NIZ1 184 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 CDC42EP2O14613 210 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 LMX1BO60663 402 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 LILRA1O75019 489 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 PTP4A3O75365 173 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 SNAP29O95721 258 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 CLPTM1O96005 669 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 LCKP06239 509 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 ZNF32P17041 273 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 APEX1P27695 318 aaKnown RBP12.93□□□□□ -0.34
LIG1-215ENST00000597901 APLNRP35414 380 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 GYS2P54840 703 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 RAP1BP61224 184 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 RAP1AP62834 184 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 ERVK-25P63136 954 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 PSG4Q00888 419 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 HSF2Q03933 536 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 RIN1Q13671 783 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 ZBED5Q49AG3 693 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 FAM205BPQ63HN1 556 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 RNF148Q8N7C7 305 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 OR13C2Q8NGS9 318 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 SPATA3Q8NHX4 192 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 ZNF519Q8TB69 540 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 SYNPRQ8TBG9 265 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 SLC7A13Q8TCU3 470 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 C11orf40Q8WZ69 217 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 MSI2Q96DH6 328 aaKnown RBP12.93□□□□□ -0.34
LIG1-215ENST00000597901 C7orf34Q96L11 122 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 OR51B6Q9H340 312 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 CCNB1IP1Q9NPC3 277 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 TMEM160Q9NX00 188 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 NDUFAF4Q9P032 175 aa12.93□□□□□ -0.34
LIG1-215ENST00000597901 FAM32AQ9Y421 112 aaKnown RBP12.93□□□□□ -0.34
LIG1-215ENST00000597901 A0A1W2PRQ8 180 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 LRP5LA4QPB2 252 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 GMNNO75496 209 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 HPXP02790 462 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 H1F0P07305 194 aaKnown RBP12.92□□□□□ -0.34
LIG1-215ENST00000597901 TACSTD2P09758 323 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 NAT2P11245 290 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 ZNF250P15622 560 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 ZNF26P17031 533 aaPredicted RBP12.92□□□□□ -0.34
LIG1-215ENST00000597901 RHCEP18577 417 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 CCNOP22674 350 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 STOMP27105 288 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 LAP3P28838 519 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 RPL4P36578 427 aaKnown RBP12.92□□□□□ -0.34
LIG1-215ENST00000597901 GUCA1AP43080 201 aaPredicted RBP12.92□□□□□ -0.34
LIG1-215ENST00000597901 GPR4P46093 362 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 SELENOVP59797 346 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 DGCR6Q14129 220 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 ELFN2Q5R3F8 820 aa12.92□□□□□ -0.34
LIG1-215ENST00000597901 PIGWQ7Z7B1 504 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms