RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ALG12Q9BV10 488 aa13.19□□□□□ -0.3
TRIM28-207ENST00000597136 HCAR1Q9BXC0 346 aa13.19□□□□□ -0.3
TRIM28-207ENST00000597136 NMNAT2Q9BZQ4 307 aa13.19□□□□□ -0.3
TRIM28-207ENST00000597136 MED20Q9H944 212 aa13.19□□□□□ -0.3
TRIM28-207ENST00000597136 SLC22A23A1A5C7 686 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 TUBAL3A6NHL2 446 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 CENPBD1B2RD01 187 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 RENP00797 406 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 KIR2DL3P43628 341 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 DBPQ10586 325 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-207ENST00000597136 OCLNQ16625 522 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 SFRP5Q5T4F7 317 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 AADACL4Q5VUY2 407 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 LAIR2Q6ISS4 152 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 KRT80Q6KB66 452 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 BBS1Q8NFJ9 593 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 OTULINQ96BN8 352 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 SYT4Q9H2B2 425 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 SLCO5A1Q9H2Y9 848 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 DNAJC27Q9NZQ0 273 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 LRCH1Q9Y2L9 728 aa13.18□□□□□ -0.3
TRIM28-207ENST00000597136 MAP1AP78559 2803 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ENTPD6O75354 484 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ITGA5P08648 1049 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 PRF1P14222 555 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 SLC25A1P53007 311 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 CLRN1P58418 232 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 SORDQ00796 357 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 HIST3H3Q16695 136 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 MEDAGQ5VYS4 303 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 C20orf196Q8IYI0 205 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ZNF433Q8N7K0 673 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 NOXO1Q8NFA2 376 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 OR9Q1Q8NGQ5 310 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 MARVELD3Q96A59 401 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 NMD3Q96D46 503 aaKnown RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ZNF837Q96EG3 531 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ZC3HAV1LQ96H79 300 aaKnown RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ZNF582Q96NG8 517 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 TSSK2Q96PF2 358 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 RPRD1BQ9NQG5 326 aaKnown RBP13.17□□□□□ -0.3
TRIM28-207ENST00000597136 CLN6Q9NWW5 311 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 ASB6Q9NWX5 421 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 UPB1Q9UBR1 384 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 MALT1Q9UDY8 824 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 PDZD2O15018 2839 aa13.17□□□□□ -0.3
TRIM28-207ENST00000597136 SH3D21A4FU49 640 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 CYSRT1A8MQ03 144 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 DCTN6O00399 190 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 SLC43A1O75387 559 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 THBDP07204 575 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 CLUP10909 449 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 PSMB1P20618 241 aaKnown RBP13.16□□□□□ -0.3
TRIM28-207ENST00000597136 CSNK1A1P48729 337 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 TEKQ02763 1124 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 P2RY6Q15077 328 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 SMN1Q16637 294 aaKnown RBP13.16□□□□□ -0.3
TRIM28-207ENST00000597136 C6orf141Q5SZD1 244 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 THEM4Q5T1C6 240 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 NXNL2Q5VZ03 156 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 LRFN4Q6PJG9 635 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 OR6V1Q8N148 313 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 TMEM54Q969K7 222 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 S100PBPQ96BU1 408 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 Q96MT0 163 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 RBP7Q96R05 134 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 NUAK2Q9H093 628 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 SRA1Q9HD15 236 aaKnown RBP13.16□□□□□ -0.3
TRIM28-207ENST00000597136 GLTPQ9NZD2 209 aa13.16□□□□□ -0.3
TRIM28-207ENST00000597136 CNOT4O95628 575 aaKnown RBP13.15□□□□□ -0.3
TRIM28-207ENST00000597136 GYPBP06028 91 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 CTLA4P16410 223 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 SPI1P17947 270 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 COX5AP20674 150 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 SLC2A5P22732 501 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 FMO3P31513 532 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 FMODQ06828 376 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 BHLHA15Q7RTS1 189 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-207ENST00000597136 ZBTB46Q86UZ6 589 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 GID4Q8IVV7 300 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 OR6N1Q8NGY5 312 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 FNDC8Q8TC99 324 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 KISS1RQ969F8 398 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-207ENST00000597136 ALKBH3Q96Q83 286 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-207ENST00000597136 ACTR6Q9GZN1 396 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 OR51V1Q9H2C8 321 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 H2AFY2Q9P0M6 372 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-207ENST00000597136 FKBP7Q9Y680 259 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 IGKV1D-43A0A0B4J1Z2 117 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 M0R3G1 203 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 PRODHO43272 600 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 SLC16A7O60669 478 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 RAD51DO75771 328 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 QDPRP09417 244 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 EPXP11678 715 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 NR2C1P13056 603 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 CRABP1P29762 137 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 APOFQ13790 326 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 KLHL12Q53G59 568 aa13.15□□□□□ -0.3
TRIM28-207ENST00000597136 MEPCEQ7L2J0 689 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms