RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ADCK1Q86TW2 530 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 KRTAP1-3Q8IUG1 177 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 FBXL14Q8N1E6 418 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 LRRC18Q8N456 261 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 AQP11Q8NBQ7 271 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 IL17RDQ8NFM7 739 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 PERPQ96FX8 193 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 SAMD8Q96LT4 415 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 GSX2Q9BZM3 304 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 FBXL3Q9UKT7 428 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 MYO9AB2RTY4 2548 aa12.63□□□□□ -0.39
VRK3-206ENST00000594090 OVOL3O00110 214 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 IMPA2O14732 288 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 FKBP6O75344 327 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 GASTP01350 101 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 CD8AP01732 235 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 ROS1P08922 2347 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 PAX1P15863 534 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 PTH2RP49190 550 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 NKX6-1P78426 367 aaPredicted RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 RAB39AQ14964 217 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 MICAQ29983 383 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 C11orf71Q6IPW1 123 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 TMEM53Q6P2H8 277 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 PTCHD4Q6ZW05 846 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 ZNF584Q8IVC4 421 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 MUC15Q8N387 334 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 OR4F15Q8NGB8 312 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 ERMAPQ96PL5 475 aaPredicted RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 GRIP2Q9C0E4 1043 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 SYT4Q9H2B2 425 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 EGLN3Q9H6Z9 239 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 YY1AP1Q9H869 796 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 RNF121Q9H920 327 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 SIAEQ9HAT2 523 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 CA10Q9NS85 328 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 ZNF701Q9NV72 531 aaPredicted RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 VSX1Q9NZR4 365 aaPredicted RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 CDH10Q9Y6N8 788 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 HEATR1Q9H583 2144 aaKnown RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 A0A1W2PPL8 197 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 MMP7P09237 267 aaPredicted RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 CTLA4P16410 223 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 APOBEC3AP31941 199 aaPredicted RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 HGFACQ04756 655 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 ETFDHQ16134 617 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 SGCAQ16586 387 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 RPL13AP3Q6NVV1 102 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 LURAP1LQ8IV03 231 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 PAPD5Q8NDF8 572 aaKnown RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 NUP37Q8NFH4 326 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 OR10G2Q8NGC3 310 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 GTPBP3Q969Y2 492 aaKnown RBP12.62□□□□□ -0.39
VRK3-206ENST00000594090 SLCO4A1Q96BD0 722 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 IFT27Q9BW83 186 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 DGCR6LQ9BY27 220 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 CBLN4Q9NTU7 201 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 CCDC168Q8NDH2 2452 aa12.62□□□□□ -0.39
VRK3-206ENST00000594090 ARRDC5A6NEK1 342 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 GNGT2O14610 69 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 ARPC3O15145 178 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 SERPINA5P05154 406 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 ZNF35P13682 527 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 HIST1H1CP16403 213 aaKnown RBP12.61□□□□□ -0.39
VRK3-206ENST00000594090 MSR1P21757 451 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 LAP3P28838 519 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 CDKN1AP38936 164 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 CDKN2AP42771 156 aaKnown RBP12.61□□□□□ -0.39
VRK3-206ENST00000594090 GUCA1AP43080 201 aaPredicted RBP12.61□□□□□ -0.39
VRK3-206ENST00000594090 ADAM8P78325 824 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 CBX1P83916 185 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 Q5PR19 223 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 FAM27BQ5VT28 67 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 C1orf146Q5VVC0 180 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 SHEQ5VZ18 495 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 VHLLQ6RSH7 139 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 RASSF6Q6ZTQ3 369 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 CCDC121Q6ZUS5 278 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 ASRGL1Q7L266 308 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 OR52L1Q8NGH7 329 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 GIPC3Q8TF64 312 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 FBXO17Q96EF6 278 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 PLA2G12AQ9BZM1 189 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 KCNN2Q9H2S1 579 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 POLE4Q9NR33 117 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 IL20Q9NYY1 176 aa12.61□□□□□ -0.39
VRK3-206ENST00000594090 BHLHE40O14503 412 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 SLC16A7O60669 478 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 CST2P09228 141 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 ZNF32P17041 273 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 GSTM3P21266 225 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 NOS3P29474 1203 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 ATP5J2P56134 94 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 SNTB2Q13425 540 aaKnown RBP12.6□□□□□ -0.39
VRK3-206ENST00000594090 ENDOGQ14249 297 aaKnown RBP12.6□□□□□ -0.39
VRK3-206ENST00000594090 CLEC12AQ5QGZ9 265 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 KRT80Q6KB66 452 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 LEG1Q6P5S2 330 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 TMEM179BQ7Z7N9 219 aa12.6□□□□□ -0.39
VRK3-206ENST00000594090 JAZF1Q86VZ6 243 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms