RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ZNF544Q6NX49 715 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 ASRGL1Q7L266 308 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 SLC16A14Q7RTX9 510 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 LRRC75A-AS1Q8N1F1 130 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 AQP11Q8NBQ7 271 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 OR52L1Q8NGH7 329 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 NSMAFQ92636 917 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 RASD2Q96D21 266 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 ZNF75AQ96N20 296 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 SH3GL3Q99963 347 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 DHRS9Q9BPW9 319 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 IFT27Q9BW83 186 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 DGCR6LQ9BY27 220 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 GRIP2Q9C0E4 1043 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 KCNN2Q9H2S1 579 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 NOX3Q9HBY0 568 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 VSX1Q9NZR4 365 aaPredicted RBP10.34□□□□□ -0.75
LIG3-213ENST00000590630 LAMP3Q9UQV4 416 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 ATP23Q9Y6H3 246 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 CDH10Q9Y6N8 788 aa10.34□□□□□ -0.75
LIG3-213ENST00000590630 ARFGEF3Q5TH69 2177 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 IGKV1D-43A0A0B4J1Z2 117 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 IGHV2OR16-5A0A0B4J2B6 119 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 H7C1C5 153 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 SOCS2O14508 198 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 PPP1R3DO95685 299 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 GASTP01350 101 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 SERPINA5P05154 406 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 SOD3P08294 240 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 PAX1P15863 534 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 NOS3P29474 1203 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 CDAP32320 146 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 TTKP33981 857 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 LCN6P62502 163 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 CBX1P83916 185 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 PPP1R8Q12972 351 aaKnown RBP10.33□□□□□ -0.76
LIG3-213ENST00000590630 FAM27BQ5VT28 67 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 AGAP6Q5VW22 663 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 TMEM53Q6P2H8 277 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 B3GLCTQ6Y288 498 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 RASSF6Q6ZTQ3 369 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 FOXL2NBQ6ZUU3 175 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 DTX2Q86UW9 622 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 MYPOPQ86VE0 399 aaPredicted RBP10.33□□□□□ -0.76
LIG3-213ENST00000590630 OR4F15Q8NGB8 312 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 OR10G2Q8NGC3 310 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 GIPC3Q8TF64 312 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 NABP1Q96AH0 204 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 SAMD8Q96LT4 415 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 ERMAPQ96PL5 475 aaPredicted RBP10.33□□□□□ -0.76
LIG3-213ENST00000590630 GSX2Q9BZM3 304 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 C1orf198Q9H425 327 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 SEC61A2Q9H9S3 476 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 IL20Q9NYY1 176 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 DNAJB9Q9UBS3 223 aa10.33□□□□□ -0.76
LIG3-213ENST00000590630 MED13LQ71F56 2210 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 OVOL3O00110 214 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 DEAF1O75398 565 aaPredicted RBP10.32□□□□□ -0.76
LIG3-213ENST00000590630 E2F6O75461 281 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 CIB2O75838 187 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 PTHP01270 115 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 PATE4P0C8F1 98 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 MSR1P21757 451 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 CRABP1P29762 137 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 CALCRP30988 508 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 ERFP50548 548 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 COX10Q12887 443 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 SGCAQ16586 387 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 CD300LDQ6UXZ3 194 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 PTCHD4Q6ZW05 846 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 JAZF1Q86VZ6 243 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 FBXL14Q8N1E6 418 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 MUC15Q8N387 334 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 LRRC18Q8N456 261 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 NUP37Q8NFH4 326 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 FGFBP3Q8TAT2 258 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 HTRA1Q92743 480 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 GTPBP3Q969Y2 492 aaKnown RBP10.32□□□□□ -0.76
LIG3-213ENST00000590630 SLCO4A1Q96BD0 722 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 MS4A3Q96HJ5 214 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 SNX18Q96RF0 628 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 FEVQ99581 238 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 TRAF4Q9BUZ4 470 aaPredicted RBP10.32□□□□□ -0.76
LIG3-213ENST00000590630 SYT4Q9H2B2 425 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 EGLN3Q9H6Z9 239 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 RNF121Q9H920 327 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 CA10Q9NS85 328 aa10.32□□□□□ -0.76
LIG3-213ENST00000590630 ZNF701Q9NV72 531 aaPredicted RBP10.32□□□□□ -0.76
LIG3-213ENST00000590630 ZNF469Q96JG9 3925 aaPredicted RBP10.32□□□□□ -0.76
LIG3-213ENST00000590630 TEP1Q99973 2627 aaKnown RBP10.31□□□□□ -0.76
LIG3-213ENST00000590630 A0A1W2PPL8 197 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 BHLHE40O14503 412 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 SLC16A7O60669 478 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 CD8AP01732 235 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 CST2P09228 141 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 MMP7P09237 267 aaPredicted RBP10.31□□□□□ -0.76
LIG3-213ENST00000590630 ZNF35P13682 527 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 HIST1H1CP16403 213 aaKnown RBP10.31□□□□□ -0.76
LIG3-213ENST00000590630 CTLA4P16410 223 aa10.31□□□□□ -0.76
LIG3-213ENST00000590630 APOBEC3AP31941 199 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms