RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR51A7Q8NH64 312 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 PYURFQ96I23 114 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CCT8L2Q96SF2 557 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CDRT15Q96T59 188 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 VRK1Q99986 396 aaPredicted RBP7.02□□□□□ -1.29
VPS53-214ENST00000572607 ALG12Q9BV10 488 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 RAB1BQ9H0U4 201 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 PLK3Q9H4B4 646 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 SEC61A2Q9H9S3 476 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 NMNAT1Q9HAN9 279 aaPredicted RBP7.02□□□□□ -1.29
VPS53-214ENST00000572607 SMURF2Q9HAU4 748 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CDH20Q9HBT6 801 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 NOX3Q9HBY0 568 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 DYNLRB1Q9NP97 96 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CCNB1IP1Q9NPC3 277 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 MAN2C1Q9NTJ4 1040 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 ARL8BQ9NVJ2 186 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 B3GNT2Q9NY97 397 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 GRHPRQ9UBQ7 328 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 AURKCQ9UQB9 309 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 CMAHPQ9Y471 501 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 V9GYQ6 96 aa7.02□□□□□ -1.29
VPS53-214ENST00000572607 DSCAMO60469 2012 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ANK2Q01484 3957 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 STAB1Q9NY15 2570 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 TRAV27A0A087WT01 109 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 A0A1W2PRQ8 180 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ZNF503-AS2A6NEH8 195 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 XKRYO14609 159 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ARPC2O15144 300 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 NDUFS7O75251 213 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 LY6G6DO95868 133 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 IGHMP01871 453 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 FABP3P05413 133 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 TSPAN19P0C672 248 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ZNF14P17017 642 aaPredicted RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 MAKP20794 623 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 CALB2P22676 271 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 THBS4P35443 961 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 IFNGR2P38484 337 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 GPR4P46093 362 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 PPOXP50336 477 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 PPP2R2BQ00005 443 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 SPIBQ01892 262 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 RUNX1T1Q06455 604 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 DGCR6Q14129 220 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 RAB39AQ14964 217 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ADIPOQQ15848 244 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 SGCAQ16586 387 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 HIST3H3Q16695 136 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 TBC1D28Q2M2D7 210 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ZBED5Q49AG3 693 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 THEM4Q5T1C6 240 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 C10orf128Q5T292 105 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 PODNL1Q6PEZ8 512 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 TMPRSS11FQ6ZWK6 438 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 IGFN1Q86VF2 1251 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 MEX3DQ86XN8 651 aaKnown RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 WDFY1Q8IWB7 410 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ARHGAP24Q8N264 748 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 CIARTQ8N365 385 aaPredicted RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 RBM15BQ8NDT2 890 aaKnown RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 OR13C2Q8NGS9 318 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 FAM168AQ92567 244 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 NSMAFQ92636 917 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 HDAC2Q92769 488 aaKnown RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 FAM46AQ96IP4 442 aaKnown RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 NSL1Q96IY1 281 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 TNFRSF13CQ96RJ3 184 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 SH3GL3Q99963 347 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 MRPL13Q9BYD1 178 aaKnown RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 REG4Q9BYZ8 158 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 SIAEQ9HAT2 523 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 MYOZ1Q9NP98 299 aaPredicted RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 NDUFAF4Q9P032 175 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 SLC7A8Q9UHI5 535 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ZNF346Q9UL40 294 aaKnown RBP7.01□□□□□ -1.29
VPS53-214ENST00000572607 TMCC3Q9ULS5 477 aa7.01□□□□□ -1.29
VPS53-214ENST00000572607 ATRQ13535 2644 aa7□□□□□ -1.29
VPS53-214ENST00000572607 ROS1P08922 2347 aa7□□□□□ -1.29
VPS53-214ENST00000572607 MXRA5Q9NR99 2828 aa7□□□□□ -1.29
VPS53-214ENST00000572607 A0A1W2PPL8 197 aa7□□□□□ -1.29
VPS53-214ENST00000572607 UNC119BA6NIH7 251 aa7□□□□□ -1.29
VPS53-214ENST00000572607 B2RBV5 119 aa7□□□□□ -1.29
VPS53-214ENST00000572607 PRSS23O95084 383 aa7□□□□□ -1.29
VPS53-214ENST00000572607 NDUFB2O95178 105 aa7□□□□□ -1.29
VPS53-214ENST00000572607 GADD45GO95257 159 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SLC2A10O95528 541 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SERPINA5P05154 406 aa7□□□□□ -1.29
VPS53-214ENST00000572607 CD14P08571 375 aa7□□□□□ -1.29
VPS53-214ENST00000572607 PATE4P0C8F1 98 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SLC25A16P16260 332 aa7□□□□□ -1.29
VPS53-214ENST00000572607 NR4A1P22736 598 aa7□□□□□ -1.29
VPS53-214ENST00000572607 APLNRP35414 380 aa7□□□□□ -1.29
VPS53-214ENST00000572607 GLRXP35754 106 aa7□□□□□ -1.29
VPS53-214ENST00000572607 PDLIM4P50479 330 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SELENOVP59797 346 aa7□□□□□ -1.29
VPS53-214ENST00000572607 PCBD1P61457 104 aa7□□□□□ -1.29
VPS53-214ENST00000572607 ERVK-25P63136 954 aa7□□□□□ -1.29
VPS53-214ENST00000572607 MRPS34P82930 218 aaKnown RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms