RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KCNN2Q9H2S1 579 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 SMURF2Q9HAU4 748 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 HIF1ANQ9NWT6 349 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 NKIRAS2Q9NYR9 191 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 TREM2Q9NZC2 230 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 MED31Q9Y3C7 131 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 IGKV1D-43A0A0B4J1Z2 117 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 NPIPB13A6NJU9 1138 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 BBIP1A8MTZ0 92 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 NPIPB4C9JG80 1138 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 GAAP10253 952 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 CDAP32320 146 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 KDELR2P33947 212 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 APLNRP35414 380 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 LMO4P61968 165 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 HSF2Q03933 536 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 PCGF3Q3KNV8 242 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 PABPC1L2AQ5JQF8 200 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 ICA1LQ8NDH6 482 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 SNX33Q8WV41 574 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 HDAC2Q92769 488 aaKnown RBP13.73□□□□□ -0.21
CLN3-229ENST00000567963 NABP1Q96AH0 204 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 NMD3Q96D46 503 aaKnown RBP13.73□□□□□ -0.21
CLN3-229ENST00000567963 TXNIPQ9H3M7 391 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 SAR1AQ9NR31 198 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 ZNF446Q9NWS9 450 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 UGT2A1Q9Y4X1 527 aa13.73□□□□□ -0.21
CLN3-229ENST00000567963 LOC100653049A0A140TA62 436 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 CDC14BO60729 498 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 KRT34O76011 436 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 IGHV3-13P01766 116 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 MSMBP08118 114 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 CCNOP22674 350 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 STOMP27105 288 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 CRYBB2P43320 205 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 ARFIP2P53365 341 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 SELENOWP63302 87 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 FMODQ06828 376 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 MOGQ16653 247 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 CYBRD1Q53TN4 286 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 OR1J1Q8NGS3 322 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 LPAR2Q9HBW0 351 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 CCNB1IP1Q9NPC3 277 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 METRNQ9UJH8 293 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 HIF3AQ9Y2N7 669 aa13.72□□□□□ -0.21
CLN3-229ENST00000567963 FAM220BPB1ANY3 271 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 PIP5K1CO60331 668 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 SASH3O75995 380 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 TROVE2P10155 538 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLN3-229ENST00000567963 ZNF32P17041 273 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 ITGA2P17301 1181 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 CD47Q08722 323 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 ST3GAL3Q11203 375 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 TAF11Q15544 211 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 MAPRE2Q15555 327 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 SGCAQ16586 387 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 LRRC23Q53EV4 343 aaPredicted RBP13.71□□□□□ -0.21
CLN3-229ENST00000567963 ALG10Q5BKT4 473 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 FAM27BQ5VT28 67 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 SLC25A47Q6Q0C1 308 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 PCYOX1LQ8NBM8 494 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 NSMAFQ92636 917 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 BPIFA2Q96DR5 249 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 TPD52L3Q96J77 140 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 POM121L2Q96KW2 1035 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 LRRC37BQ96QE4 947 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 GID8Q9NWU2 228 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 A4GNTQ9UNA3 340 aa13.71□□□□□ -0.21
CLN3-229ENST00000567963 HTR3EA5X5Y0 456 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 NR2C1P13056 603 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 DRD4P21917 467 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 RPL27P61353 136 aaKnown RBP13.7□□□□□ -0.22
CLN3-229ENST00000567963 PSG4Q00888 419 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 TEKQ02763 1124 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 SF3A3Q12874 501 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLN3-229ENST00000567963 THEM4Q5T1C6 240 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 ZNF101Q8IZC7 436 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 OR2T12Q8NG77 320 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 OR51F2Q8NH61 342 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 PRRC1Q96M27 445 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 RBP7Q96R05 134 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 DECR2Q9NUI1 292 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 FGFR1OP2Q9NVK5 253 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 GRIP1Q9Y3R0 1128 aa13.7□□□□□ -0.22
CLN3-229ENST00000567963 LOC100509620A0A075B734 347 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 IGHV1-69-2A0A0G2JMI3 117 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 ELOVL7A1L3X0 281 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 C5orf49A4QMS7 147 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 GMNCA6NCL1 334 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 IGHMP01871 453 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 MT-ND5P03915 603 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 IFI30P13284 250 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 ANPEPP15144 967 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 FUT4P22083 530 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 WNT5AP41221 380 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 ERVK-25P63136 954 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 MVKQ03426 396 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 TOP3AQ13472 1001 aaPredicted RBP13.69□□□□□ -0.22
CLN3-229ENST00000567963 CGB2Q6NT52 195 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 MICU2Q8IYU8 434 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms