RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 A0A087WUU8 490 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 CCDC22O60826 627 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 SNAP29O95721 258 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 SERPINA1P01009 418 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 TGFAP01135 160 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 IFNA2P01563 188 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 IGHMP01871 453 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 IFNW1P05000 195 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 NCK1P16333 377 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 ZNF26P17031 533 aaPredicted RBP9.27□□□□□ -0.93
VPS39-208ENST00000564994 ZNF32P17041 273 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 APEX1P27695 318 aaKnown RBP9.27□□□□□ -0.93
VPS39-208ENST00000564994 LSP1P33241 339 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 CHN2P52757 468 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 CTXN1P60606 82 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 RPL27P61353 136 aaKnown RBP9.27□□□□□ -0.93
VPS39-208ENST00000564994 PRKCDQ05655 676 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 CD47Q08722 323 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 TRAM2Q15035 370 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 TBC1D28Q2M2D7 210 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 IFI44LQ53G44 452 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 PABPC1L2AQ5JQF8 200 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 FAM120AOSQ5T036 256 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 RGS7BPQ6MZT1 257 aaPredicted RBP9.27□□□□□ -0.93
VPS39-208ENST00000564994 TBPL2Q6SJ96 375 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 HDDC2Q7Z4H3 204 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 OR13C2Q8NGS9 318 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 OR51A7Q8NH64 312 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 SPATA3Q8NHX4 192 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 ZNF519Q8TB69 540 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 GEMIN6Q8WXD5 167 aaKnown RBP9.27□□□□□ -0.93
VPS39-208ENST00000564994 NSMAFQ92636 917 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 YIPF5Q969M3 257 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 HSH2DQ96JZ2 352 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 SNX18Q96RF0 628 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 FNDC11Q9BVV2 318 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 SHARPINQ9H0F6 387 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 C1orf198Q9H425 327 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 EFCAB1Q9HAE3 211 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 SMURF2Q9HAU4 748 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 CDH20Q9HBT6 801 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 STX18Q9P2W9 335 aaKnown RBP9.27□□□□□ -0.93
VPS39-208ENST00000564994 LPAR3Q9UBY5 353 aa9.27□□□□□ -0.93
VPS39-208ENST00000564994 IGLV3-9A0A075B6K5 115 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 LOC100509620A0A075B734 347 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 IQCMA0A1B0GVH7 501 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 A0A1W2PPW3 197 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 SLC22A23A1A5C7 686 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 HTR3EA5X5Y0 456 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 RNF212BA8MTL3 300 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 EFCAB9A8MZ26 197 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 CDC42EP2O14613 210 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 WNT9BO14905 357 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 GSTA4O15217 222 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 PHF1O43189 567 aaPredicted RBP9.26□□□□□ -0.93
VPS39-208ENST00000564994 PTHP01270 115 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 LCKP06239 509 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 SAGP10523 405 aaPredicted RBP9.26□□□□□ -0.93
VPS39-208ENST00000564994 ZNF250P15622 560 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 IFNA8P32881 189 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 WNT5AP41221 380 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 MAGEB1P43366 347 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 NUDT2P50583 147 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 UCP2P55851 309 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 ERVK-25P63136 954 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 PSG4Q00888 419 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 PLP2Q04941 152 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 TAF11Q15544 211 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 SGCAQ16586 387 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 TMEM255AQ5JRV8 349 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 FAM27BQ5VT28 67 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 HACD2Q6Y1H2 254 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 FOXL2NBQ6ZUU3 175 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 OAFQ86UD1 273 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 PHC2Q8IXK0 858 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 AKR7LQ8NHP1 331 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 ACOT11Q8WXI4 607 aaPredicted RBP9.26□□□□□ -0.93
VPS39-208ENST00000564994 GTF3AQ92664 365 aaKnown RBP9.26□□□□□ -0.93
VPS39-208ENST00000564994 C1orf159Q96HA4 380 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 POM121L2Q96KW2 1035 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 ELAC2Q9BQ52 826 aaKnown RBP9.26□□□□□ -0.93
VPS39-208ENST00000564994 ALG12Q9BV10 488 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 MYLK2Q9H1R3 596 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 TAAR3PQ9P1P4 343 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 ABCD2Q9UBJ2 740 aa9.26□□□□□ -0.93
VPS39-208ENST00000564994 C17orf100A8MU93 164 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 H7C1C5 153 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 RP2O75695 350 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 SCG5P05408 212 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 CCNOP22674 350 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 STOMP27105 288 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 LAP3P28838 519 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 APLNRP35414 380 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 RAD52P43351 418 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 GPR4P46093 362 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 CDH15P55291 814 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 KLF3P57682 345 aaPredicted RBP9.25□□□□□ -0.93
VPS39-208ENST00000564994 PSME3P61289 254 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 LCN6P62502 163 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 HSF2Q03933 536 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms