RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	AKR7A3	O95154	331 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	IGHV3-13	P01766	116 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	IGHV2-70	P01814	119 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	HLA-H	P01893	362 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	SERPINA5	P05154	406 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	GUSB	P08236	651 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RPS17	P08708	135 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	KRT16	P08779	473 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	GSTA2	P09210	222 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	WNT2	P09544	360 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	UBTFL6	P0CB48	400 aa	Predicted RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	CD79A	P11912	226 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	UQCRC2	P22695	453 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	STX2	P32856	288 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	PGM1	P36871	562 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	TGFBR2	P37173	567 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	LIPA	P38571	399 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	PTDSS1	P48651	473 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	IDH2	P48735	452 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RAB1A	P62820	205 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	BST1	Q10588	318 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	CEACAM7	Q14002	265 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	LASP1	Q14847	261 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RAB39A	Q14964	217 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	HERPUD1	Q15011	391 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	LARS2	Q15031	903 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	GSG1	Q2KHT4	349 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ALKBH6	Q3KRA9	238 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ATP6AP1L	Q52LC2	224 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ESCO2	Q56NI9	601 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	DCST2	Q5T1A1	773 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	NOXRED1	Q6NXP6	359 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	NIPAL3	Q6P499	406 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	C11orf88	Q6PI97	169 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	GDPGP1	Q6ZNW5	385 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RPS27L	Q71UM5	84 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	GPAT4	Q86UL3	456 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	EPHX4	Q8IUS5	362 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	CTAGE3P	Q8IX95	158 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	DDIAS	Q8IXT1	998 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	C1orf174	Q8IYL3	243 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	GALNT4	Q8N4A0	578 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ZNF614	Q8N883	585 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	FAM71C	Q8NEG0	241 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	OR4S1	Q8NGB4	309 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ZNF563	Q8TA94	476 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	PSMA8	Q8TAA3	256 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ZNF519	Q8TB69	540 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	MGARP	Q8TDB4	240 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	CIDEC	Q96AQ7	238 aa	Predicted RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	NEURL3	Q96EH8	262 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	FAM120B	Q96EK7	910 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	DNAJA3	Q96EY1	480 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	OTUB1	Q96FW1	271 aa	Predicted RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	EGLN2	Q96KS0	407 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ALKBH3	Q96Q83	286 aa	Predicted RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	ZNF382	Q96SR6	550 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	EBPL	Q9BY08	206 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	EGLN1	Q9GZT9	426 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	DPAGT1	Q9H3H5	408 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	EXOSC3	Q9NQT5	275 aa	Known RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RNF14	Q9UBS8	474 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	OR5V1	Q9UGF6	321 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	OSGIN1	Q9UJX0	560 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	FAF1	Q9UNN5	650 aa	Predicted RBP	3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RCE1	Q9Y256	329 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	RASD1	Q9Y272	281 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	SLC35A3	Q9Y2D2	325 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	TMED7	Q9Y3B3	224 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	JRKL	Q9Y4A0	524 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	KCNE3	Q9Y6H6	103 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076		U3KQK5	164 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	HERC2	O95714	4834 aa		3.9	□□□□□ -1.79
SCFD1-223	ENST00000557076	DYNC2H1	Q8NCM8	4307 aa	Known RBP	3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	DNAH1	Q9P2D7	4330 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	TRAV40	A0A0B4J280	105 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	IGHV2-70D	A0A0C4DH43	119 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	LOC102725191	A0A1B0GVB3	256 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	TMEM72	A0PK05	275 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	DUXA	A6NLW8	204 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076		F5H697	171 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	RNASEK-C17orf49	H0YIS7	233 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076		H3BUI4	141 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	PGRMC1	O00264	195 aa	Known RBP	3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	EIF3H	O15372	352 aa	Known RBP eCLIP	3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	RAD51C	O43502	376 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	MGRN1	O60291	552 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	FCMR	O60667	390 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	STX11	O75558	287 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	UGT2B17	O75795	530 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	SEC31A	O94979	1220 aa	Known RBP	3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	NXPH3	O95157	252 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	AK1	P00568	194 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	IGHV1-46	P01743	117 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	ENO1	P06733	434 aa	Known RBP	3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	NDUFB7	P17568	137 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	CCNA2	P20248	432 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	RYK	P34925	604 aa		3.89	□□□□□ -1.79
SCFD1-223	ENST00000557076	CAPZA2	P47755	286 aa		3.89	□□□□□ -1.79

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