RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CXCL12P48061 93 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 RFX3P48380 749 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 NUTF2P61970 127 aaKnown RBP1.65□□□□□ -2.15
SCFD1-216ENST00000555550 MRPL28Q13084 256 aaKnown RBP1.65□□□□□ -2.15
SCFD1-216ENST00000555550 PDZK1Q5T2W1 519 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 ARL9Q6T311 187 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 UNQ9165/PRO28630Q6UXU0 137 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 LHFPL3Q86UP9 236 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 VSTM4Q8IW00 320 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 OR13G1Q8NGZ3 307 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 OR1P1Q8NH06 330 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 UBE2Q2Q8WVN8 375 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 THRSPQ92748 146 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 FLYWCH2Q96CP2 140 aaKnown RBP1.65□□□□□ -2.15
SCFD1-216ENST00000555550 COPS8Q99627 209 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF391Q9UJN7 358 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 SCN1AP35498 2009 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 NLRC5Q86WI3 1866 aa1.65□□□□□ -2.15
SCFD1-216ENST00000555550 FBN3Q75N90 2809 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 ADGRL1O94910 1474 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 K7EQM0 130 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 YIF1AO95070 293 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 CLDN9O95484 217 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 KRT8P05787 483 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 C2P06681 752 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 CT62P0C5K7 136 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 NCK1P16333 377 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 COL8A2P25067 703 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 DCKP27707 260 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 CASP14P31944 242 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 YAP1P46937 504 aaKnown RBP1.64□□□□□ -2.15
SCFD1-216ENST00000555550 FLI1Q01543 452 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-216ENST00000555550 BAMBIQ13145 260 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 SRSF5Q13243 272 aaKnown RBP1.64□□□□□ -2.15
SCFD1-216ENST00000555550 TEX43Q6ZNM6 134 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 TMEM135Q86UB9 458 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 TMEM104Q8NE00 496 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 OR4K5Q8NGD3 323 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 LILRB4Q8NHJ6 448 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 PANX2Q96RD6 677 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF607Q96SK3 696 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 PARD6BQ9BYG5 372 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 AZI2Q9H6S1 392 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 SLC35D1Q9NTN3 355 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 ENOPH1Q9UHY7 261 aa1.64□□□□□ -2.15
SCFD1-216ENST00000555550 C16orf90A8MZG2 172 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 BPY2O14599 106 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 GCM2O75603 506 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-216ENST00000555550 PSMA5P28066 241 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 CD1CP29017 333 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 AQP2P41181 271 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 GRIA1P42261 906 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 SSR1P43307 286 aaKnown RBP1.63□□□□□ -2.15
SCFD1-216ENST00000555550 IRX3P78415 501 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-216ENST00000555550 FGL1Q08830 312 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 PTPN20Q4JDL3 420 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 THEM4Q5T1C6 240 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 LRRC74BQ6ZQY2 392 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 ASCL5Q7RTU5 278 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 FAM110BQ8TC76 370 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 RLN3Q8WXF3 142 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 EMG1Q92979 244 aaKnown RBP1.63□□□□□ -2.15
SCFD1-216ENST00000555550 STMN2Q93045 179 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 C10orf35Q96D05 121 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 TBL1YQ9BQ87 522 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 TCHPQ9BT92 498 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 SAV1Q9H4B6 383 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-216ENST00000555550 NMRAL1Q9HBL8 299 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 SNX6Q9UNH7 406 aa1.63□□□□□ -2.15
SCFD1-216ENST00000555550 NID2Q14112 1375 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 F6UB75 175 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 DYNC1I1O14576 645 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 AIFM1O95831 613 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 IQCF3P0C7M6 154 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 P0C880 135 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 DBTP11182 482 aaKnown RBP1.62□□□□□ -2.15
SCFD1-216ENST00000555550 IL1RNP18510 177 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 TNFSF9P41273 254 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 IL15RAQ13261 267 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 CLINT1Q14677 625 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 PON2Q15165 354 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 CCNJQ5T5M9 372 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 OR2A2Q6IF42 318 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 PLET1Q6UQ28 207 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 Q6ZPB1 254 aaPredicted RBP1.62□□□□□ -2.15
SCFD1-216ENST00000555550 DHDDSQ86SQ9 333 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 OR2T34Q8NGX1 318 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 PIK3IP1Q96FE7 263 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 MTMR9Q96QG7 549 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 SH3GL1Q99961 368 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 RAB33BQ9H082 229 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 NIPAL2Q9H841 368 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 KLHL28Q9NXS3 571 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 PTBP2Q9UKA9 531 aaKnown RBP1.62□□□□□ -2.15
SCFD1-216ENST00000555550 HYOU1Q9Y4L1 999 aa1.62□□□□□ -2.15
SCFD1-216ENST00000555550 A0A0U1RQV1 116 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 VGLL3A8MV65 326 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 K7EPI3 171 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 POLR1CO15160 346 aaPredicted RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 SOX15O60248 233 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms