RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 A0A1W2PRM7 423 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 SLC22A20A6NK97 555 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 KRTAP29-1A8MX34 341 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF780AO75290 641 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-208ENST00000553278 FKBP6O75344 327 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 IGKV3-20P01619 116 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CT45A6P0DMU7 189 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CT45A5P0DMU8 189 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CT45A7P0DMV0 189 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CALM1P0DP23 149 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CALM2P0DP24 149 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CALM3P0DP25 149 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 LCN1P31025 176 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 FMO3P31513 532 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 MDH2P40926 338 aaKnown RBP4.38□□□□□ -1.71
SCFD1-208ENST00000553278 P2RY4P51582 365 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CCR8P51685 355 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 XRCC4Q13426 336 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 ARFRP1Q13795 201 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 TSC22D1Q15714 1073 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 GABRA6Q16445 453 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 NRF1Q16656 503 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CT45A1Q5HYN5 189 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 TPRG1LQ5T0D9 272 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 PDPK2PQ6A1A2 396 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF440Q8IYI8 595 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 POM121L12Q8N7R1 296 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 OR2AP1Q8NGE2 309 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 OR10R2Q8NGX6 335 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CT45A3Q8NHU0 189 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 SPATA3Q8NHX4 192 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 SDR42E1Q8WUS8 393 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 EEF1AKMT3Q96AZ1 226 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 NRBF2Q96F24 287 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 VSIG2Q96IQ7 327 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 SH3GL3Q99963 347 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 HINT2Q9BX68 163 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 PRRG3Q9BZD7 231 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 TMEM38AQ9H6F2 299 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 KIR3DX1Q9H7L2 352 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 SPACA1Q9HBV2 294 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 EML4Q9HC35 981 aaKnown RBP4.38□□□□□ -1.71
SCFD1-208ENST00000553278 MRM3Q9HC36 420 aaKnown RBP4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CSNK1G1Q9HCP0 422 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CD209Q9NNX6 404 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF302Q9NR11 478 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CTPS2Q9NRF8 586 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 MCUBQ9NWR8 336 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 CD274Q9NZQ7 290 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 SHPKQ9UHJ6 478 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 RBMX2Q9Y388 322 aaKnown RBP4.38□□□□□ -1.71
SCFD1-208ENST00000553278 POGZQ7Z3K3 1410 aa4.38□□□□□ -1.71
SCFD1-208ENST00000553278 KIR2DL5BA0A0G2JN68 375 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 KIR2DL5BA0A0G2JPC4 375 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF726A6NNF4 738 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 SERF1AO75920 110 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 AK4P27144 223 aaPredicted RBP4.37□□□□□ -1.71
SCFD1-208ENST00000553278 OR3A4PP47883 348 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 TAS2R19P59542 299 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 ATP6V0D1P61421 351 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 SLC25A11Q02978 314 aaKnown RBP4.37□□□□□ -1.71
SCFD1-208ENST00000553278 EGFEM1PQ0D2K5 195 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 SPECC1LQ69YQ0 1117 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 PRMT9Q6P2P2 845 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 PID1Q7Z2X4 250 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 KIR2DL5AQ8N109 375 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 NKAPP1Q8N9T2 125 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 OR10H4Q8NGA5 316 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 OR2A1Q8NGT9 310 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 KIR2DL5BQ8NHK3 375 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 ITFG1Q8TB96 612 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 GTSF1Q8WW33 167 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF689Q96CS4 500 aaPredicted RBP4.37□□□□□ -1.71
SCFD1-208ENST00000553278 RNF170Q96K19 258 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 SERPINB12Q96P63 405 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 ARHGDIGQ99819 225 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 CHMP4BQ9H444 224 aaKnown RBP4.37□□□□□ -1.71
SCFD1-208ENST00000553278 PATZ1Q9HBE1 687 aaKnown RBP4.37□□□□□ -1.71
SCFD1-208ENST00000553278 AIG1Q9NVV5 245 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 ADA2Q9NZK5 511 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 XCL2Q9UBD3 114 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 KLK13Q9UKR3 277 aa4.37□□□□□ -1.71
SCFD1-208ENST00000553278 AQRO60306 1485 aaKnown RBP eCLIP4.37□□□□□ -1.711e-6■■□□□ 14.5
SCFD1-208ENST00000553278 E7EWF7 191 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 SMKR1H3BMG3 65 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 RFXANKO14593 260 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 KLK1P06870 262 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 FOLR1P15328 257 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 DEKP35659 375 aaKnown RBP4.36□□□□□ -1.71
SCFD1-208ENST00000553278 SERPINB5P36952 375 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 ORC2Q13416 577 aaPredicted RBP4.36□□□□□ -1.71
SCFD1-208ENST00000553278 GGTLC2Q14390 218 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 KCTD19Q17RG1 926 aaPredicted RBP4.36□□□□□ -1.71
SCFD1-208ENST00000553278 Q1RN00 199 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 HIGD2BQ4VC39 106 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 MARC1Q5VT66 337 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 CGB2Q6NT52 195 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 OR2W3Q7Z3T1 314 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF329Q86UD4 541 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 ZADH2Q8N4Q0 377 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms