RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 TNFRSF13CQ96RJ3 184 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 GPX7Q96SL4 187 aaPredicted RBP10.22□□□□□ -0.77
HDAC4-216ENST00000544989 GSX1Q9H4S2 264 aaPredicted RBP10.22□□□□□ -0.77
HDAC4-216ENST00000544989 CCNB1IP1Q9NPC3 277 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 IL1RAPQ9NPH3 570 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 ACTR3BQ9P1U1 418 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 GPR160Q9UJ42 338 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 TMCC3Q9ULS5 477 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 ZANQ9Y493 2812 aa10.22□□□□□ -0.77
HDAC4-216ENST00000544989 FN1P02751 2386 aaKnown RBP10.22□□□□□ -0.77
HDAC4-216ENST00000544989 hCG_2039718K7EN88 272 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 GADD45GO95257 159 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SNAP29O95721 258 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SEMG1P04279 462 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 TP53P04637 393 aaPredicted RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 HOXB6P17509 224 aaKnown RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 PCSK6P29122 969 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 APLNRP35414 380 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 THBS4P35443 961 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 RAD52P43351 418 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 GPR4P46093 362 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 PDLIM4P50479 330 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 RPS6KA3P51812 740 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 MYBPC1Q00872 1141 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SPIBQ01892 262 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 RAB39AQ14964 217 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 FAM27BQ5VT28 67 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 KRT80Q6KB66 452 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SLC25A47Q6Q0C1 308 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 TSEN54Q7Z6J9 526 aaKnown RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 ADCK1Q86TW2 530 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 MYPOPQ86VE0 399 aaPredicted RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 ALDH16A1Q8IZ83 802 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 CIARTQ8N365 385 aaPredicted RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 ZNF540Q8NDQ6 660 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SLC30A7Q8NEW0 376 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 NEU4Q8WWR8 484 aaPredicted RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 NMD3Q96D46 503 aaKnown RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 FAM46AQ96IP4 442 aaKnown RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 TSPAN32Q96QS1 320 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SH3GL3Q99963 347 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 BCL2L14Q9BZR8 327 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 C1orf21Q9H246 121 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SEC61A2Q9H9S3 476 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 CDH20Q9HBT6 801 aa10.21□□□□□ -0.77
HDAC4-216ENST00000544989 PRPF19Q9UMS4 504 aaKnown RBP10.21□□□□□ -0.77
HDAC4-216ENST00000544989 SH3PXD2BA1X283 911 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 UNC119BA6NIH7 251 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 RNF223E7ERA6 249 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 CDC42EP2O14613 210 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 SYNGR3O43761 229 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 NDUFS7O75251 213 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 PTP4A3O75365 173 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 SLC2A10O95528 541 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 LY6G6DO95868 133 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 CST2P09228 141 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 APEHP13798 732 aaKnown RBP10.2□□□□□ -0.78
HDAC4-216ENST00000544989 SDHAP31040 664 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 OMPP47874 163 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 LIMS1P48059 325 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 LSM11P83369 360 aaKnown RBP eCLIP10.2□□□□□ -0.78
HDAC4-216ENST00000544989 PPP2R2BQ00005 443 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 FHL1Q13642 323 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 SGCAQ16586 387 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 MOGQ16653 247 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 ARFGEF3Q5TH69 2177 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 DPY19L2P2Q6ZN68 376 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 SYT9Q86SS6 491 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 FAM86B1Q8N7N1 296 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 NSMAFQ92636 917 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 MRPL24Q96A35 216 aaKnown RBP10.2□□□□□ -0.78
HDAC4-216ENST00000544989 MS4A3Q96HJ5 214 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 RSRC1Q96IZ7 334 aaKnown RBP10.2□□□□□ -0.78
HDAC4-216ENST00000544989 ZNF570Q96NI8 536 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 VRK1Q99986 396 aaPredicted RBP10.2□□□□□ -0.78
HDAC4-216ENST00000544989 MS4A5Q9H3V2 200 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 MAGIXQ9H6Y5 334 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 DYNLRB1Q9NP97 96 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 ADAM21Q9UKJ8 722 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 SIGLEC7Q9Y286 467 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 TLN2Q9Y4G6 2542 aa10.2□□□□□ -0.78
HDAC4-216ENST00000544989 TRBV4-1A0A0J9YWV2 114 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 LOC390937A0A1W2PQ73 354 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 PRSS37A4D1T9 235 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 C12orf71A8MTZ7 269 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 IMPA2O14732 288 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 MSR1P21757 451 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 FPR3P25089 353 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 ERVK-25P63136 954 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 TRIM25Q14258 630 aaKnown RBP10.19□□□□□ -0.78
HDAC4-216ENST00000544989 IQCCQ4KMZ1 466 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 RGS7BPQ6MZT1 257 aaPredicted RBP10.19□□□□□ -0.78
HDAC4-216ENST00000544989 RPL13AP3Q6NVV1 102 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 PGM2L1Q6PCE3 622 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 SMARCD3Q6STE5 483 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 ARL9Q6T311 187 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 FOXL2NBQ6ZUU3 175 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 IGFN1Q86VF2 1251 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 DHFR2Q86XF0 187 aa10.19□□□□□ -0.78
HDAC4-216ENST00000544989 ZNF584Q8IVC4 421 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms