RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CD14P08571 375 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 IGFBP1P08833 259 aaPredicted RBP12.75□□□□□ -0.37
USP28-204ENST00000537642 MMP7P09237 267 aaPredicted RBP12.75□□□□□ -0.37
USP28-204ENST00000537642 NR2C1P13056 603 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 GLRXP35754 106 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 RAP1BP61224 184 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 RAP1AP62834 184 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 SPATS1Q496A3 300 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 THEM4Q5T1C6 240 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 GKAP1Q5VSY0 366 aaPredicted RBP12.75□□□□□ -0.37
USP28-204ENST00000537642 PAQR4Q8N4S7 273 aaPredicted RBP12.75□□□□□ -0.37
USP28-204ENST00000537642 ARIH2OSQ8N7S6 290 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 SLC30A7Q8NEW0 376 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 OR52J3Q8NH60 311 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 C10orf105Q8TEF2 133 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 FAM168AQ92567 244 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 MRPL24Q96A35 216 aaKnown RBP12.75□□□□□ -0.37
USP28-204ENST00000537642 RBP7Q96R05 134 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 MRPL37Q9BZE1 423 aaKnown RBP12.75□□□□□ -0.37
USP28-204ENST00000537642 SLC7A8Q9UHI5 535 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 ADAM18Q9Y3Q7 739 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 SPEF1Q9Y4P9 236 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 FKBP7Q9Y680 259 aa12.75□□□□□ -0.37
USP28-204ENST00000537642 B2RBV5 119 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 H7C1C5 153 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 CSF3P09919 207 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 CCL2P13500 99 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 ITGA2P17301 1181 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 RPL4P36578 427 aaKnown RBP12.74□□□□□ -0.37
USP28-204ENST00000537642 MNAT1P51948 309 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 LCN6P62502 163 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 GALK2Q01415 458 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 SGCAQ16586 387 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 FOXL2NBQ6ZUU3 175 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 FAM122BQ7Z309 247 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 ZCCHC24Q8N2G6 241 aaKnown RBP12.74□□□□□ -0.37
USP28-204ENST00000537642 CCDC197Q8NCU1 140 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 FNDC8Q8TC99 324 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 NSL1Q96IY1 281 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 Q96M85 177 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 GPA33Q99795 319 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 C1orf198Q9H425 327 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 FBXO9Q9UK97 447 aaPredicted RBP12.74□□□□□ -0.37
USP28-204ENST00000537642 SIGLEC7Q9Y286 467 aa12.74□□□□□ -0.37
USP28-204ENST00000537642 SONP18583 2426 aaKnown RBP12.73□□□□□ -0.37
USP28-204ENST00000537642 SH3PXD2BA1X283 911 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 INAFM1C9JVW0 142 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 NDUFB2O95178 105 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 GADD45GO95257 159 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 SLC25A16P16260 332 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 ZNF32P17041 273 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 PCSK6P29122 969 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 EVX1P49640 407 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 PDLIM4P50479 330 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 FXYD6P3P58550 94 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 SPIBQ01892 262 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 MESTQ5EB52 335 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 PABPC1L2AQ5JQF8 200 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 FAM27BQ5VT28 67 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 THSD4Q6ZMP0 1018 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 LRP11Q86VZ4 500 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 CPEB3Q8NE35 698 aaKnown RBP12.73□□□□□ -0.37
USP28-204ENST00000537642 RSRC1Q96IZ7 334 aaKnown RBP12.73□□□□□ -0.37
USP28-204ENST00000537642 ZNF570Q96NI8 536 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 SYT3Q9BQG1 590 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 RAB1BQ9H0U4 201 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 KCNN2Q9H2S1 579 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 DYNLRB1Q9NP97 96 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 IL1RAPQ9NPH3 570 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 FAM53CQ9NYF3 392 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 GRHPRQ9UBQ7 328 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 FZR1Q9UM11 496 aa12.73□□□□□ -0.37
USP28-204ENST00000537642 IQCMA0A1B0GVH7 501 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 SLC22A23A1A5C7 686 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 UNC119BA6NIH7 251 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 SNAP29O95721 258 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 PTHP01270 115 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 SCG5P05408 212 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 FABP3P05413 133 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 ADRA2AP08913 450 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 FAM157BP0CG42 384 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 T-ENOLP0DO92 83 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 ATP6V1B2P21281 511 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 APEX1P27695 318 aaKnown RBP12.72□□□□□ -0.37
USP28-204ENST00000537642 LAP3P28838 519 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 SMIM11AP58511 58 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 RPS23P62266 143 aaKnown RBP12.72□□□□□ -0.37
USP28-204ENST00000537642 HSF2Q03933 536 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 PLP2Q04941 152 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 LOXL1Q08397 574 aaPredicted RBP12.72□□□□□ -0.37
USP28-204ENST00000537642 TBC1D28Q2M2D7 210 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 KRTAP21-3Q3LHN1 58 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 CYP2R1Q6VVX0 501 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 RINLQ6ZS11 566 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 ZER1Q7Z7L7 766 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 MCUR1Q96AQ8 359 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 RASD2Q96D21 266 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 GPX7Q96SL4 187 aaPredicted RBP12.72□□□□□ -0.37
USP28-204ENST00000537642 NDEL1Q9GZM8 345 aa12.72□□□□□ -0.37
USP28-204ENST00000537642 CDH20Q9HBT6 801 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms