RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FLOT2Q14254 428 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 GK3PQ14409 553 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 SWI5Q1ZZU3 235 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 MICAQ29983 383 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 ZNF620Q6ZNG0 422 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 PTCHD4Q6ZW05 846 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 DPPA2Q7Z7J5 298 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 TGIF2LYQ8IUE0 185 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 WFDC11Q8NEX6 87 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 NUP37Q8NFH4 326 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 OR4F15Q8NGB8 312 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 OR9Q2Q8NGE9 314 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 NANOS1Q8WY41 292 aaKnown RBP11.24□□□□□ -0.61
VPS28-216ENST00000533806 RASD2Q96D21 266 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 TMUB1Q9BVT8 246 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 LRMDAQ9H2I8 198 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 OR52D1Q9H346 318 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 MMADHCQ9H3L0 296 aaPredicted RBP11.24□□□□□ -0.61
VPS28-216ENST00000533806 CXorf56Q9H5V9 222 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 FAIMQ9NVQ4 179 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 IL20Q9NYY1 176 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 IER3IP1Q9Y5U9 82 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 DSCAMO60469 2012 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 USF3Q68DE3 2245 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 ACANP16112 2415 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 H7C1C5 153 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 CCNB2O95067 398 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 FARS2O95363 451 aaKnown RBP11.23□□□□□ -0.61
VPS28-216ENST00000533806 TP53P04637 393 aaPredicted RBP11.23□□□□□ -0.61
VPS28-216ENST00000533806 CTLA4P16410 223 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 NR4A1P22736 598 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 PTDSS1P48651 473 aaKnown RBP11.23□□□□□ -0.61
VPS28-216ENST00000533806 LCN6P62502 163 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 NPRL3Q12980 569 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 KRR1Q13601 381 aaKnown RBP11.23□□□□□ -0.61
VPS28-216ENST00000533806 RAB39AQ14964 217 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 ETFDHQ16134 617 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 ZNF362Q5T0B9 420 aaPredicted RBP11.23□□□□□ -0.61
VPS28-216ENST00000533806 AGAP6Q5VW22 663 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 SHEQ5VZ18 495 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 CD300LDQ6UXZ3 194 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 ASRGL1Q7L266 308 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 SLC16A14Q7RTX9 510 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 ADCK1Q86TW2 530 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 MUC15Q8N387 334 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 FANK1Q8TC84 345 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 NSMAFQ92636 917 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 FBXO17Q96EF6 278 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 SAMD8Q96LT4 415 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 ZNF570Q96NI8 536 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 DDOQ99489 341 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 DGCR6LQ9BY27 220 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 NDEL1Q9GZM8 345 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 REEP1Q9H902 201 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 DLL4Q9NR61 685 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 CA10Q9NS85 328 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 CBLN4Q9NTU7 201 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 POU2F3Q9UKI9 436 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 FBXL3Q9UKT7 428 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 SAMHD1Q9Y3Z3 626 aaKnown RBP11.23□□□□□ -0.61
VPS28-216ENST00000533806 ATP23Q9Y6H3 246 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 U3KQV3 271 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 ARID1AO14497 2285 aa11.23□□□□□ -0.61
VPS28-216ENST00000533806 BHLHE40O14503 412 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 XKRYO14609 159 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 IDH3BO43837 385 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 STAMBPO95630 424 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 PPP1R3DO95685 299 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 CST1P01037 141 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 CST2P09228 141 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 SLC6A6P31641 620 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 FABP6P51161 128 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 RPS6KA3P51812 740 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 ENDOGQ14249 297 aaKnown RBP11.22□□□□□ -0.61
VPS28-216ENST00000533806 ADIPOQQ15848 244 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 RASSF6Q6ZTQ3 369 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 TMEM179BQ7Z7N9 219 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 SPATA24Q86W54 205 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 FBXL14Q8N1E6 418 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 CPEB3Q8NE35 698 aaKnown RBP11.22□□□□□ -0.61
VPS28-216ENST00000533806 OR8D4Q8NGM9 314 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 PERPQ96FX8 193 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 ERMAPQ96PL5 475 aaPredicted RBP11.22□□□□□ -0.61
VPS28-216ENST00000533806 SNX18Q96RF0 628 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 PLA2G12AQ9BZM1 189 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 EGLN3Q9H6Z9 239 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 ZNF442Q9H7R0 627 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 NTN4Q9HB63 628 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 CDH10Q9Y6N8 788 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 ZANQ9Y493 2812 aa11.22□□□□□ -0.61
VPS28-216ENST00000533806 ARRDC5A6NEK1 342 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 H7C417 338 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 DCTN6O00399 190 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 SOCS2O14508 198 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 NDUFS7O75251 213 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 FKBP6O75344 327 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 RAB36O95755 333 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 HIST1H1CP16403 213 aaKnown RBP11.21□□□□□ -0.61
VPS28-216ENST00000533806 LAP3P28838 519 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 THBS4P35443 961 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms