RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SNX18Q96RF0 628 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 DDOQ99489 341 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 USB1Q9BQ65 265 aaKnown RBP12.26□□□□□ -0.45
USF1-209ENST00000529476 GABARAPL3Q9BY60 117 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 NUAK2Q9H093 628 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 RPRD1BQ9NQG5 326 aaKnown RBP12.26□□□□□ -0.45
USF1-209ENST00000529476 KLHL21Q9UJP4 597 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 ORC6Q9Y5N6 252 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 CSMD2Q7Z408 3487 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 PKDREJQ9NTG1 2253 aa12.26□□□□□ -0.45
USF1-209ENST00000529476 NF1P21359 2839 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 A0A1W2PPL8 197 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 RIIAD1A6NNX1 92 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 ZAR1LA6NP61 321 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 DCTN6O00399 190 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 KHDRBS3O75525 346 aaKnown RBP12.25□□□□□ -0.45
USF1-209ENST00000529476 IFNGP01579 166 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 HMGN1P05114 100 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 EPXP11678 715 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 HOXC12P31275 282 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 NPRL3Q12980 569 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 PPA1Q15181 289 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 ZIK1Q3SY52 487 aaPredicted RBP12.25□□□□□ -0.45
USF1-209ENST00000529476 SEZ6L2Q6UXD5 910 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 P2RY8Q86VZ1 359 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 OR6V1Q8N148 313 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 SLC22A24Q8N4F4 322 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 FAM222BQ8WU58 562 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 MUCL1Q96DR8 90 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 SEC61A2Q9H9S3 476 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 RNPEPL1Q9HAU8 725 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 SRA1Q9HD15 236 aaKnown RBP12.25□□□□□ -0.45
USF1-209ENST00000529476 CMC2Q9NRP2 79 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 TVP23BQ9NYZ1 205 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 ENOPH1Q9UHY7 261 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 B9D1Q9UPM9 204 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 COA3Q9Y2R0 106 aaPredicted RBP12.25□□□□□ -0.45
USF1-209ENST00000529476 SLC25A15Q9Y619 301 aa12.25□□□□□ -0.45
USF1-209ENST00000529476 ARPC4-TTLL3A0A0A6YYG9 625 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 IGLV1-36A0A0B4J1U3 117 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 ZNF503-AS2A6NEH8 195 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 FAM183AA6NL82 134 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 FAM171A2A8MVW0 826 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 M0R129 80 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 CASQ2O14958 399 aaPredicted RBP12.24□□□□□ -0.45
USF1-209ENST00000529476 SURF4O15260 269 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 MGRN1O60291 552 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 SCG5P05408 212 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 ZNF3P17036 446 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 RAD23AP54725 363 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 UBE2NP61088 152 aaKnown RBP12.24□□□□□ -0.45
USF1-209ENST00000529476 MRPS34P82930 218 aaKnown RBP12.24□□□□□ -0.45
USF1-209ENST00000529476 SLC34A1Q06495 639 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 SGCAQ16586 387 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 SLX4IPQ5VYV7 408 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 FOXL2NBQ6ZUU3 175 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 MED13LQ71F56 2210 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 SKA3Q8IX90 412 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 GALNT4Q8N4A0 578 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 OR9Q1Q8NGQ5 310 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 NABP1Q96AH0 204 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 MBOAT4Q96T53 435 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 SH3GL3Q99963 347 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 C1QTNF6Q9BXI9 259 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 TOR3AQ9H497 397 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 MED20Q9H944 212 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 SLC24A3Q9HC58 644 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 ZNF226Q9NYT6 803 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 ZNF224Q9NZL3 707 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 KCNN3Q9UGI6 736 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 AMDHD2Q9Y303 409 aa12.24□□□□□ -0.45
USF1-209ENST00000529476 RRP15Q9Y3B9 282 aaKnown RBP12.24□□□□□ -0.45
USF1-209ENST00000529476 CASKO14936 926 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 MPZL1O95297 269 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 SNAP29O95721 258 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 GPANK1O95872 356 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 HLA-HP01893 362 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 PATE4P0C8F1 98 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 OR8G3PP0DMU2 310 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 HOXB1P14653 301 aaPredicted RBP12.23□□□□□ -0.45
USF1-209ENST00000529476 CRYGSP22914 178 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 LAP3P28838 519 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 CRABP1P29762 137 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 PYCR1P32322 319 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 CAPZA2P47755 286 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 CENPAP49450 140 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 SNAPC1Q16533 368 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 OGFRL1Q5TC84 451 aaPredicted RBP12.23□□□□□ -0.45
USF1-209ENST00000529476 OTPQ5XKR4 325 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 C12orf73Q69YU5 71 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 DNM1P34Q6PK57 102 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 ZBTB46Q86UZ6 589 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 GLB1L2Q8IW92 636 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 LRRC18Q8N456 261 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 FGFBP3Q8TAT2 258 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 ZNRF4Q8WWF5 429 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 OTULINQ96BN8 352 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 POM121Q96HA1 1249 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 PLEKHA8Q96JA3 519 aa12.23□□□□□ -0.45
USF1-209ENST00000529476 SLC38A2Q96QD8 506 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms