RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 CTSFQ9UBX1 484 aa1.59□□□□□ -2.15
SMC4-227ENST00000497984 CDH9Q9ULB4 789 aa1.59□□□□□ -2.15
SMC4-227ENST00000497984 AP1M2Q9Y6Q5 423 aa1.59□□□□□ -2.15
SMC4-227ENST00000497984 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.58□□□□□ -2.16
SMC4-227ENST00000497984 IGKV3D-11A0A0A0MRZ8 115 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 CLRN2A0PK11 232 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 DYNC1I1O14576 645 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 UTS2O95399 124 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 GNAO1P09471 354 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 AQP2P41181 271 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 RFX3P48380 749 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 PITPNAQ00169 270 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 CLINT1Q14677 625 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 THEM4Q5T1C6 240 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 LRRC74BQ6ZQY2 392 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 SLC25A48Q6ZT89 311 aaKnown RBP1.58□□□□□ -2.16
SMC4-227ENST00000497984 NCCRP1Q6ZVX7 275 aaPredicted RBP1.58□□□□□ -2.16
SMC4-227ENST00000497984 OAFQ86UD1 273 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 CALHM1Q8IU99 346 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 COQ8AQ8NI60 647 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 SCFD1Q8WVM8 642 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 C17orf50Q8WW18 174 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 RTN4IP1Q8WWV3 396 aaPredicted RBP1.58□□□□□ -2.16
SMC4-227ENST00000497984 STMN2Q93045 179 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 FAM3DQ96BQ1 224 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 PIK3IP1Q96FE7 263 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 IFT74Q96LB3 600 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 PSKH2Q96QS6 385 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 CAMK2N2Q96S95 79 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 CDX2Q99626 313 aaPredicted RBP1.58□□□□□ -2.16
SMC4-227ENST00000497984 TCHPQ9BT92 498 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 FAM49BQ9NUQ9 324 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 SH3BGRL2Q9UJC5 107 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 SNX6Q9UNH7 406 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 PEX16Q9Y5Y5 336 aa1.58□□□□□ -2.16
SMC4-227ENST00000497984 YEATS2Q9ULM3 1422 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 PCP4L1A6NKN8 68 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 SNNO75324 88 aaPredicted RBP1.57□□□□□ -2.16
SMC4-227ENST00000497984 GCM2O75603 506 aaPredicted RBP1.57□□□□□ -2.16
SMC4-227ENST00000497984 C1orf105O95561 183 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 APCSP02743 223 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CD74P04233 296 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CALM1P0DP23 149 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CALM2P0DP24 149 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CALM3P0DP25 149 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CCNB1P14635 433 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CD34P28906 385 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 MAGEA8P43361 318 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CXCL12P48061 93 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 PRRX1P54821 245 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 IRX3P78415 501 aaPredicted RBP1.57□□□□□ -2.16
SMC4-227ENST00000497984 MAB21L1Q13394 359 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 SLC39A6Q13433 755 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CFAP157Q5JU67 520 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 ATAD3BQ5T9A4 648 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 SLC25A24Q6NUK1 477 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 CEMP1Q6PRD7 247 aaPredicted RBP1.57□□□□□ -2.16
SMC4-227ENST00000497984 ARL9Q6T311 187 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 UNQ9165/PRO28630Q6UXU0 137 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 BRD3OSQ6XYD6 125 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 EFL1Q7Z2Z2 1120 aaKnown RBP1.57□□□□□ -2.16
SMC4-227ENST00000497984 PRSS58Q8IYP2 241 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 LRRC75A-AS1Q8N1F1 130 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 PLEKHA8Q96JA3 519 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 PANX2Q96RD6 677 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 TMEM43Q9BTV4 400 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 TRIM62Q9BVG3 475 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 ANKRD19PQ9H560 264 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 UVRAGQ9P2Y5 699 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 PIGLQ9Y2B2 252 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 NUP214P35658 2090 aaPredicted RBP1.57□□□□□ -2.16
SMC4-227ENST00000497984 TNS2Q63HR2 1409 aa1.57□□□□□ -2.16
SMC4-227ENST00000497984 ADGRL1O94910 1474 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 TRAV6A0A075B6T7 132 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 SNTNA6NMZ2 147 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 TSPAN12O95859 305 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 HLA-DQA1P01909 254 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 ZNF138P52744 262 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 ZNF616Q08AN1 781 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 PIGHQ14442 188 aaPredicted RBP1.56□□□□□ -2.16
SMC4-227ENST00000497984 PON2Q15165 354 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 SMUG1Q53HV7 270 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 ANKRD22Q5VYY1 191 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 AP1ARQ63HQ0 302 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 PRMT9Q6P2P2 845 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 H2BFWTQ7Z2G1 175 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 OR9A2Q8NGT5 310 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 OR10R2Q8NGX6 335 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 LINC01560Q8TB33 94 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 PIBF1Q8WXW3 757 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 RBMXL1Q96E39 390 aaKnown RBP1.56□□□□□ -2.16
SMC4-227ENST00000497984 SLC39A3Q9BRY0 314 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 PTBP2Q9UKA9 531 aaKnown RBP1.56□□□□□ -2.16
SMC4-227ENST00000497984 SIGLEC9Q9Y336 463 aa1.56□□□□□ -2.16
SMC4-227ENST00000497984 MRPS18BQ9Y676 258 aaKnown RBP1.56□□□□□ -2.16
SMC4-227ENST00000497984 MUC6Q6W4X9 2439 aa1.55□□□□□ -2.16
SMC4-227ENST00000497984 A0A1W2PPE3 182 aa1.55□□□□□ -2.16
SMC4-227ENST00000497984 CHST1O43916 411 aa1.55□□□□□ -2.16
SMC4-227ENST00000497984 TIMM8AO60220 97 aaPredicted RBP1.55□□□□□ -2.16
SMC4-227ENST00000497984 NCK1P16333 377 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms