RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 UBE2IP63279 158 aaKnown RBP13.3□□□□□ -0.28
HDAC6-220ENST00000477528 ACSM1Q08AH1 577 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 OR2G2Q8NGZ5 317 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 DOCK4Q8N1I0 1966 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 PIAS2O75928 621 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 RPS27P42677 84 aaKnown RBP13.3□□□□□ -0.28
HDAC6-220ENST00000477528 PSG6Q00889 435 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 GRAMD2AQ8IUY3 354 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 OR1N1Q8NGS0 311 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 ZFAND1Q8TCF1 268 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 STK35Q8TDR2 534 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 KTI12Q96EK9 354 aaPredicted RBP13.3□□□□□ -0.28
HDAC6-220ENST00000477528 RAB22AQ9UL26 194 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 DSPPQ9NZW4 1301 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 S100A9P06702 114 aaKnown RBP13.3□□□□□ -0.28
HDAC6-220ENST00000477528 NAGAP17050 411 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 MRPL49Q13405 166 aaKnown RBP13.3□□□□□ -0.28
HDAC6-220ENST00000477528 TNK1Q13470 666 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 SLC17A1Q14916 467 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 RTL6Q6ICC9 239 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 FIP1L1Q6UN15 594 aaKnown RBP13.3□□□□□ -0.28
HDAC6-220ENST00000477528 KCNG3Q8TAE7 436 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 HAO2Q9NYQ3 351 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 WIF1Q9Y5W5 379 aa13.3□□□□□ -0.28
HDAC6-220ENST00000477528 A0A0A6YYJ9 748 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 POU3F2P20265 443 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 DLSTP36957 453 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 MMP15P51511 669 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 SRYQ05066 204 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 CNN3Q15417 329 aaKnown RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 STOML3Q8TAV4 291 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 KCNG2Q9UJ96 466 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 IGHV1OR15-9A0A0B4J2B8 117 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 LOC102725191A0A1B0GVB3 256 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 H3BUI4 141 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 NUDT21O43809 227 aaKnown RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 LIPCP11150 499 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 FASLGP48023 281 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 CLVS2Q5SYC1 327 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 GALNT11Q8NCW6 608 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 OR56B1Q8NGI3 324 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 OIT3Q8WWZ8 545 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 VSTM2LQ96N03 204 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 SLC5A7Q9GZV3 580 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 B9D1Q9UPM9 204 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 BORCS7-ASMTA0A0B4J1R7 106 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 LOC107986453A0A1B0GWG9 222 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 MEN1O00255 615 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 HSPA12AO43301 675 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 DIRAS3O95661 229 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 ZGLP1P0C6A0 271 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 RNF4P78317 190 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 EXT1Q16394 746 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 FAM76BQ5HYJ3 339 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 Q6ZTK2 550 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 SMIM4Q8WVI0 70 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 CMTM3Q96MX0 182 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 SLC25A21Q9BQT8 299 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 SEC22CQ9BRL7 303 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 TMEM59Q9BXS4 323 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 NXF2Q9GZY0 626 aaKnown RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 ANKRD61A6NGH8 418 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 GGT3PA6NGU5 568 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 NFYAP23511 347 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 OPCMLQ14982 345 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 ACTBL2Q562R1 376 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 GLCCI1Q86VQ1 547 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 LSMEM1Q8N8F7 131 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 C10orf90Q96M02 699 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 DERL3Q96Q80 235 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 FLRT3Q9NZU0 649 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 CGGBP1Q9UFW8 167 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 FBXL4Q9UKA2 621 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 MRPS28Q9Y2Q9 187 aaKnown RBP13.29□□□□□ -0.28
HDAC6-220ENST00000477528 V9GYH0 126 aa13.29□□□□□ -0.28
HDAC6-220ENST00000477528 GDF1P27539 372 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 ZNF93P35789 620 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-220ENST00000477528 TMEM71Q6P5X7 295 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 LRRC69Q6ZNQ3 347 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 PGAP1Q75T13 922 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 FAM109AQ8N4B1 249 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 MIB2Q96AX9 1013 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 TM4SF19Q96DZ7 209 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 TAS2R4Q9NYW5 299 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 RHBDD3Q9Y3P4 386 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 OR6C68A6NDL8 312 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 FTCDNL1E5RQL4 147 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 KNG1P01042 644 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 S100A6P06703 90 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 GZMKP49863 264 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 PCBD1P61457 104 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 CPEB2Q7Z5Q1 589 aaKnown RBP13.28□□□□□ -0.28
HDAC6-220ENST00000477528 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-220ENST00000477528 SYT3Q9BQG1 590 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 EMC6Q9BV81 110 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 BARHL1Q9BZE3 327 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 SLCO1C1Q9NYB5 712 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 NEUROG3Q9Y4Z2 214 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 PRAMEF27A3QJZ7 478 aa13.28□□□□□ -0.28
HDAC6-220ENST00000477528 ATF1P18846 271 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms