RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 KCNN2Q9H2S1 579 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 C1orf198Q9H425 327 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 EFCAB1Q9HAE3 211 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 MAN2C1Q9NTJ4 1040 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 IQCMA0A1B0GVH7 501 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 NPIPB13A6NJU9 1138 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 NPIPB4C9JG80 1138 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 FFAR1O14842 300 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 PTHP01270 115 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 LCKP06239 509 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 NCK1P16333 377 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 GIFP27352 417 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 APEX1P27695 318 aaKnown RBP13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 APLNRP35414 380 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF133P52736 654 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 CTXN1P60606 82 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 ERVS71-1P61550 626 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 SGCAQ16586 387 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 NRN1LQ496H8 165 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 C8orf82Q6P1X6 216 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 CLDN22Q8N7P3 220 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 OR13C2Q8NGS9 318 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 OR51A7Q8NH64 312 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 SNX18Q96RF0 628 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 KCTD14Q9BQ13 255 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 SOX7Q9BT81 388 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 MS4A5Q9H3V2 200 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 CCNB1IP1Q9NPC3 277 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF346Q9UL40 294 aaKnown RBP13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 UGT2A1Q9Y4X1 527 aa13.49□□□□□ -0.25
CCDC88B-205ENST00000472524 SLC22A23A1A5C7 686 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 EFCAB9A8MZ26 197 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 CLPTM1O96005 669 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 IGHMP01871 453 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 HPXP02790 462 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 MMP7P09237 267 aaPredicted RBP13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 NAT2P11245 290 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 NR2C1P13056 603 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 SRD5A1P18405 259 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 CCNOP22674 350 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 IL2RGP31785 369 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 GPR4P46093 362 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 CHN2P52757 468 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 RPL27P61353 136 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 MRPS34P82930 218 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 PRKCDQ05655 676 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 TAF11Q15544 211 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 TRIP10Q15642 601 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 NKPD1Q17RQ9 610 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 PABPC1L2AQ5JQF8 200 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 SLC25A47Q6Q0C1 308 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 HACD2Q6Y1H2 254 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF730Q6ZMV8 503 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 OAFQ86UD1 273 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 OR1J2Q8NGS2 313 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 ACOT11Q8WXI4 607 aaPredicted RBP13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 NABP1Q96AH0 204 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 NMD3Q96D46 503 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 ALG12Q9BV10 488 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 C19orf24Q9BVV8 132 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 FAM107BQ9H098 131 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 LRMDAQ9H2I8 198 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 SIAEQ9HAT2 523 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 SMURF2Q9HAU4 748 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 TAAR3PQ9P1P4 343 aa13.48□□□□□ -0.25
CCDC88B-205ENST00000472524 NBEAL1Q6ZS30 2694 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 A0A087WUU8 490 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 HTR3EA5X5Y0 456 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 LILRA1O75019 489 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 PRSS23O95084 383 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 SNAP29O95721 258 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 TGFAP01135 160 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 TACSTD2P09758 323 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF32P17041 273 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 KLF3P57682 345 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 SELENOVP59797 346 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 PSME3P61289 254 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 ERVK-25P63136 954 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 RIN1Q13671 783 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 CCNIQ14094 377 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 ELFN2Q5R3F8 820 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 FAM120AOSQ5T036 256 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 TBPL2Q6SJ96 375 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 LRRC75AQ8NAA5 344 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 AKR7LQ8NHP1 331 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 SYNPRQ8TBG9 265 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 TSPAN32Q96QS1 320 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 RBP7Q96R05 134 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 EGFL7Q9UHF1 273 aa13.47□□□□□ -0.25
CCDC88B-205ENST00000472524 A0A1W2PPL8 197 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 GMNCA6NCL1 334 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 H7C1C5 153 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 NDUFAB1O14561 156 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 MGRN1O60291 552 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 NCR1O76036 304 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 THBS2P35442 1172 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 RPL4P36578 427 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 RAD52P43351 418 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 SLC9A3P48764 834 aa13.46□□□□□ -0.25
CCDC88B-205ENST00000472524 UCP2P55851 309 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms