RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 DAP3P51398 398 aaKnown RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF133P52736 654 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ACTG1P63261 375 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 FMODQ06828 376 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 SCGB2A2Q13296 93 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 TSTQ16762 297 aaKnown RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 MMEL1Q495T6 779 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 SPATA46Q5T0L3 261 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ARMC4Q5T2S8 1044 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ACSM5Q6NUN0 579 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 CCDC80Q76M96 950 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF101Q8IZC7 436 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF418Q8TF45 676 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 HDAC2Q92769 488 aaKnown RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 NABP1Q96AH0 204 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 NMD3Q96D46 503 aaKnown RBP13.7□□□□□ -0.22
COL7A1-204ENST00000462475 PLA2G12AQ9BZM1 189 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 LRMDAQ9H2I8 198 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 SAP30LQ9HAJ7 183 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 INIPQ9NRY2 104 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 SH3GLB1Q9Y371 365 aa13.7□□□□□ -0.22
COL7A1-204ENST00000462475 CLDN25C9JDP6 229 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 TPD52L2O43399 206 aaKnown RBP13.69□□□□□ -0.22
COL7A1-204ENST00000462475 MGRN1O60291 552 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 IGHV2-5P01817 119 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF32P17041 273 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 MAKP20794 623 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 DRD4P21917 467 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 MPV17P39210 176 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 WNT5AP41221 380 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 TAS2R41P59536 307 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 HILS1P60008 231 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 MRPS34P82930 218 aaKnown RBP13.69□□□□□ -0.22
COL7A1-204ENST00000462475 TEKQ02763 1124 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 HDDC2Q7Z4H3 204 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 AKR7LQ8NHP1 331 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 TSPEARQ8WU66 669 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 IPCEF1Q8WWN9 437 aaPredicted RBP13.69□□□□□ -0.22
COL7A1-204ENST00000462475 RASSF5Q8WWW0 418 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 RAB39BQ96DA2 213 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 SGTBQ96EQ0 304 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 TMPRSS13Q9BYE2 586 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 SIAEQ9HAT2 523 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 NPHS2Q9NP85 383 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 DECR2Q9NUI1 292 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 INTS9Q9NV88 658 aaKnown RBP13.69□□□□□ -0.22
COL7A1-204ENST00000462475 PCDHB10Q9UN67 800 aa13.69□□□□□ -0.22
COL7A1-204ENST00000462475 FBP2O00757 339 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 IGHV1-46P01743 117 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 MT-ND5P03915 603 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 TSPAN19P0C672 248 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 ANPEPP15144 967 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 ADRA2CP18825 462 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 STOMP27105 288 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 RBM34P42696 430 aaKnown RBP13.68□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF81P51508 661 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 PIN1Q13526 163 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-204ENST00000462475 RABL3Q5HYI8 236 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 RFPL4BQ6ZWI9 263 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 ZNF771Q7L3S4 317 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-204ENST00000462475 C1QL2Q7Z5L3 287 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 TMEM239Q8WW34 195 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 NSMAFQ92636 917 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 POM121L2Q96KW2 1035 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 CCNB1IP1Q9NPC3 277 aa13.68□□□□□ -0.22
COL7A1-204ENST00000462475 LOC100509620A0A075B734 347 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 A0A0G2JMP0 313 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 A0A0X1KG70 313 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 C5orf49A4QMS7 147 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 ZSCAN5BA6NJL1 495 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 FXYD1O00168 92 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 SPRY3O43610 288 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 PIP5K1CO60331 668 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 OR5F1O95221 314 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 IGF2P01344 180 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 VIMP08670 466 aaKnown RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 OR1E2P47887 323 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 COMPP49747 757 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 MMP15P51511 669 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 ARFIP2P53365 341 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 ERVK-25P63136 954 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 CD47Q08722 323 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 HNRNPA0Q13151 305 aaKnown RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 TOP3AQ13472 1001 aaPredicted RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 SGCAQ16586 387 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 MOGQ16653 247 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 HFEQ30201 348 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 THEM4Q5T1C6 240 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 NANOGP8Q6NSW7 305 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 USP43Q70EL4 1123 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 PEG10Q86TG7 708 aaKnown RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 CALHM3Q86XJ0 350 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 CLDN22Q8N7P3 220 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 OR4M2Q8NGB6 313 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 SLC25A40Q8TBP6 338 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 FAM216AQ8WUB2 273 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 LIPHQ8WWY8 451 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 ELMOD3Q96FG2 381 aa13.67□□□□□ -0.22
COL7A1-204ENST00000462475 MARS2Q96GW9 593 aaKnown RBP13.67□□□□□ -0.22
COL7A1-204ENST00000462475 KCNN2Q9H2S1 579 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms