RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 IFNGR2P38484 337 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 MRPS34P82930 218 aaKnown RBP13.14□□□□□ -0.31
LIMS3-201ENST00000437679 PLP2Q04941 152 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 SGCAQ16586 387 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 CLEC2AQ6UVW9 174 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 DHFR2Q86XF0 187 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 CLDN22Q8N7P3 220 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 ZNF570Q96NI8 536 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 FUZQ9BT04 418 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 C1orf198Q9H425 327 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 PLK3Q9H4B4 646 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 CCNB1IP1Q9NPC3 277 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 TMCC3Q9ULS5 477 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 SIGLEC7Q9Y286 467 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 ADAM18Q9Y3Q7 739 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 CMAHPQ9Y471 501 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 UGT2A1Q9Y4X1 527 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 RTTNQ86VV8 2226 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 IGKV1D-43A0A0B4J1Z2 117 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 IQCMA0A1B0GVH7 501 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 OR10H3O60404 316 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 STAMBPO95630 424 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 ZNF26P17031 533 aaPredicted RBP13.13□□□□□ -0.31
LIMS3-201ENST00000437679 EFNA4P52798 201 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 DSCR9P59020 149 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 RPS23P62266 143 aaKnown RBP13.13□□□□□ -0.31
LIMS3-201ENST00000437679 HSF2Q03933 536 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 TRIM25Q14258 630 aaKnown RBP13.13□□□□□ -0.31
LIMS3-201ENST00000437679 GPR139Q6DWJ6 353 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 LCN8Q6JVE9 175 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 TRPM8Q7Z2W7 1104 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 ZNF584Q8IVC4 421 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 SLC30A7Q8NEW0 376 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 OR1J2Q8NGS2 313 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 POP5Q969H6 163 aaKnown RBP13.13□□□□□ -0.31
LIMS3-201ENST00000437679 Q96M85 177 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 VRK1Q99986 396 aaPredicted RBP13.13□□□□□ -0.31
LIMS3-201ENST00000437679 RHNO1Q9BSD3 238 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 C1orf21Q9H246 121 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 LRMDAQ9H2I8 198 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 SLC7A8Q9UHI5 535 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 FKBP7Q9Y680 259 aa13.13□□□□□ -0.31
LIMS3-201ENST00000437679 A0A1W2PPL8 197 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 SLC22A23A1A5C7 686 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 RNF223E7ERA6 249 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 H7C1C5 153 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 AHCYL1O43865 530 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 KRT36O76013 467 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 SDHAP31040 664 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 GLRXP35754 106 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 RPS6KA3P51812 740 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 LCN6P62502 163 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 KRR1Q13601 381 aaKnown RBP13.12□□□□□ -0.31
LIMS3-201ENST00000437679 TBC1D28Q2M2D7 210 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 SMARCD3Q6STE5 483 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 DPY19L2P2Q6ZN68 376 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 DNM1P46Q6ZS02 220 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 ZER1Q7Z7L7 766 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 SVOPLQ8N434 492 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 NABP1Q96AH0 204 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 GPX7Q96SL4 187 aaPredicted RBP13.12□□□□□ -0.31
LIMS3-201ENST00000437679 REG4Q9BYZ8 158 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 MAGIXQ9H6Y5 334 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 CDH20Q9HBT6 801 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 NRIP3Q9NQ35 241 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 TAS2R1Q9NYW7 299 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 ZFHX3Q15911 3703 aa13.12□□□□□ -0.31
LIMS3-201ENST00000437679 TEX13CA0A0J9YWL9 993 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 TCRBV5S2A0A599 114 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 PRSS37A4D1T9 235 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 GPRIN2O60269 458 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 LY6G6DO95868 133 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 F12P00748 615 aaPredicted RBP13.11□□□□□ -0.31
LIMS3-201ENST00000437679 HEXAP06865 529 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 ERCC1P07992 297 aaPredicted RBP13.11□□□□□ -0.31
LIMS3-201ENST00000437679 MMP7P09237 267 aaPredicted RBP13.11□□□□□ -0.31
LIMS3-201ENST00000437679 CSF3P09919 207 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 FPR3P25089 353 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 APLNRP35414 380 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 PPOXP50336 477 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 MESTQ5EB52 335 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 PABPC1L2AQ5JQF8 200 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 FAM27BQ5VT28 67 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 THSD4Q6ZMP0 1018 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 FAM122BQ7Z309 247 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 ZNF525Q8N782 197 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 FANK1Q8TC84 345 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 GNPDA2Q8TDQ7 276 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 CCDC124Q96CT7 223 aaKnown RBP13.11□□□□□ -0.31
LIMS3-201ENST00000437679 RASD2Q96D21 266 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 LRGUKQ96M69 825 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 DOK1Q99704 481 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 GPA33Q99795 319 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 THTPAQ9BU02 230 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 RAB1BQ9H0U4 201 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 DYNLRB1Q9NP97 96 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 IL20RAQ9UHF4 553 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 IER3IP1Q9Y5U9 82 aa13.11□□□□□ -0.31
LIMS3-201ENST00000437679 SOCS2O14508 198 aa13.1□□□□□ -0.31
LIMS3-201ENST00000437679 CST2P09228 141 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms