RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 GRK5P34947 590 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 CRISP1P54107 249 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ESRRGP62508 458 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 EFNB1P98172 346 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 GINS1Q14691 196 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 PPA1Q15181 289 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 KLHL24Q6TFL4 600 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ZNF813Q6ZN06 617 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ZBTB46Q86UZ6 589 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 SKA3Q8IX90 412 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 OR6V1Q8N148 313 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 FAM169BQ8N8A8 192 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ICA1LQ8NDH6 482 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 OR2T33Q8NG76 320 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 OR52L1Q8NGH7 329 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 OR52N5Q8NH56 324 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ZNRF4Q8WWF5 429 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ZC3HAV1LQ96H79 300 aaKnown RBP10.84□□□□□ -0.67
USP40-205ENST00000430158 TSSK2Q96PF2 358 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 CIB1Q99828 191 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 TMEM204Q9BSN7 226 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 RBM4Q9BWF3 364 aaKnown RBP10.84□□□□□ -0.67
USP40-205ENST00000430158 NUAK2Q9H093 628 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ZNF556Q9HAH1 456 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 TBC1D23Q9NUY8 699 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 DSCAMO60469 2012 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 USF3Q68DE3 2245 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 XKRYO14609 159 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 GOSR1O95249 250 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 IGLV1-44P01699 117 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 MMP7P09237 267 aaPredicted RBP10.83□□□□□ -0.68
USP40-205ENST00000430158 ANPEPP15144 967 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 POLR2IP36954 125 aaKnown RBP10.83□□□□□ -0.68
USP40-205ENST00000430158 TUBA1BP68363 451 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 TUBA4AP68366 448 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP40-205ENST00000430158 CD47Q08722 323 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 DAG1Q14118 895 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 KCNMB1Q16558 191 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 FAM27BQ5VT28 67 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 TMEM236Q5W0B7 351 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 LEG1Q6P5S2 330 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 TUBA1AQ71U36 451 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 SSX8Q7RTT4 187 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 WFDC8Q8IUA0 241 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 SLC22A24Q8N4F4 322 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 CBR4Q8N4T8 237 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 SLC37A3Q8NCC5 494 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 OR52E2Q8NGJ4 325 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 NSMAFQ92636 917 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 PTP4A1Q93096 173 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 GABARAPL3Q9BY60 117 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 SIAEQ9HAT2 523 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 CMC2Q9NRP2 79 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 KRT84Q9NSB2 600 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 ZNF226Q9NYT6 803 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 B9D1Q9UPM9 204 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 AMDHD2Q9Y303 409 aa10.83□□□□□ -0.68
USP40-205ENST00000430158 ARFGEF3Q5TH69 2177 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.82□□□□□ -0.68
USP40-205ENST00000430158 ZAR1LA6NP61 321 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 H3BN98 237 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 DLGAP1O14490 977 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 EI24O14681 340 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SURF4O15260 269 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SLC16A7O60669 478 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 AVPP01185 164 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 IGKV3-15P01624 115 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 HLA-HP01893 362 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 GAAP10253 952 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 NR2C1P13056 603 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 CBR1P16152 277 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 POU1F1P28069 291 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 NOS3P29474 1203 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SLC25A1P53007 311 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 KRTAP10-9P60411 292 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 ENDOGQ14249 297 aaKnown RBP10.82□□□□□ -0.68
USP40-205ENST00000430158 PTGES3Q15185 160 aaKnown RBP10.82□□□□□ -0.68
USP40-205ENST00000430158 RCN1Q15293 331 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 C3orf36Q3SXR2 165 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 NCMAPQ5T1S8 102 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SLX4IPQ5VYV7 408 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SLC27A4Q6P1M0 643 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 MYPOPQ86VE0 399 aaPredicted RBP10.82□□□□□ -0.68
USP40-205ENST00000430158 CCDC36Q8IYA8 594 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 CYB561A3Q8NBI2 242 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SDR9C7Q8NEX9 313 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 TEX47Q8TBZ9 253 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 STMN2Q93045 179 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 MUCL1Q96DR8 90 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 SH3GL3Q99963 347 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 RBM4BQ9BQ04 359 aaKnown RBP10.82□□□□□ -0.68
USP40-205ENST00000430158 HCAR1Q9BXC0 346 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 RACGAP1Q9H0H5 632 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 POLE4Q9NR33 117 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 RASSF1Q9NS23 344 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 NKX1-2Q9UD57 310 aaPredicted RBP10.82□□□□□ -0.68
USP40-205ENST00000430158 FKBP7Q9Y680 259 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 MAST4O15021 2626 aa10.82□□□□□ -0.68
USP40-205ENST00000430158 MYO9AB2RTY4 2548 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms