RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 BATF2Q8N1L9 274 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 UPRTQ96BW1 309 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 MAP6Q96JE9 813 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 TSSK2Q96PF2 358 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 MS4A8Q9BY19 250 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ARV1Q9H2C2 271 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 UFSP2Q9NUQ7 469 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 OR52A1Q9UKL2 312 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 XRCC3O43542 346 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 DDAH2O95865 285 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 OR10A3P58181 314 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 DPPA2Q7Z7J5 298 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 EID2Q8N6I1 236 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 OR13C5Q8NGS8 318 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF566Q969W8 418 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 BANF2Q9H503 90 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 KPTNQ9Y664 436 aa13.32□□□□□ -0.28
PTPRU-204ENST00000428026 C17orf112F2Z3M2 114 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 HPNP05981 417 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 LPLP06858 475 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 THBS1P07996 1170 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 PFN3P60673 137 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 SNTB1Q13884 538 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 XKR7Q5GH72 579 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 GLIPR1L1Q6UWM5 242 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 LANCL3Q6ZV70 420 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 NAA40Q86UY6 237 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 MMP21Q8N119 569 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 NECAP1Q8NC96 275 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 SLC16A11Q8NCK7 471 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 CCNL2Q96S94 520 aaPredicted RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 MCRIP1C9JLW8 97 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 GABARAPH6UMI1 98 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 HRO43593 1189 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 GDF1P27539 372 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 ARNTP27540 789 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF239Q16600 458 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM179BQ7Z7N9 219 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 FAM58AQ8N1B3 248 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 ARSGQ96EG1 525 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 AKIP1Q9NQ31 210 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 NTNG1Q9Y2I2 539 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 CROCCQ5TZA2 2017 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF724A8MTY0 619 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TRIM77I1YAP6 450 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 EIF4EP06730 217 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TSFMP43897 325 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 BIDP55957 195 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 EEF1A2Q05639 463 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 SMAD4Q13485 552 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 OR5L1Q8NGL2 311 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 EDAQ92838 391 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TPPP3Q9BW30 176 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 FN3KRPQ9HA64 309 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 NDUFB11Q9NX14 153 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 NPFFR2Q9Y5X5 522 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM265A0A087WTH1 108 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 HSD17B6O14756 317 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 CER1O95813 267 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 SLC2A1P11166 492 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 HOXA1P49639 335 aaPredicted RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 HAGHQ16775 308 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 LINC00299Q6ZSB3 139 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 SLC16A14Q7RTX9 510 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 C1orf87Q8N0U7 546 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 Q96M85 177 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TEAD3Q99594 435 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 KNL1Q8NG31 2342 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 BRWD3Q6RI45 1802 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM129A0AVI4 362 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 C20orf202A1L168 122 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 UMAD1C9J7I0 102 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 MTHFD2P13995 350 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 EPHA4P54764 986 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 C4orf17Q53FE4 359 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 ZNF684Q5T5D7 378 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 DPY19L2P2Q6ZN68 376 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 ANGPTL5Q86XS5 388 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 TNFRSF12AQ9NP84 129 aa13.31□□□□□ -0.28
PTPRU-204ENST00000428026 PTRH2Q9Y3E5 179 aaKnown RBP13.31□□□□□ -0.28
PTPRU-204ENST00000428026 SLC5A10A0PJK1 596 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 RAB27BO00194 218 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 NR0B2Q15466 257 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 BTLAQ7Z6A9 289 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 OR51A4Q8NGJ6 313 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 ARRDC3Q96B67 414 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 ELSPBP1Q96BH3 223 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 SLC25A37Q9NYZ2 338 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 SELENBP1Q13228 472 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 TMEM201Q5SNT2 666 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 OR8G2PQ6IF36 304 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 OR6M1Q8NGM8 313 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 OR1S2Q8NGQ3 325 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 USB1Q9BQ65 265 aaKnown RBP13.3□□□□□ -0.28
PTPRU-204ENST00000428026 SYT5O00445 386 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 CPEP16870 476 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 PTBP1P26599 531 aaKnown RBP eCLIP13.3□□□□□ -0.28
PTPRU-204ENST00000428026 AANATQ16613 207 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 CLEC1AQ8NC01 280 aa13.3□□□□□ -0.28
PTPRU-204ENST00000428026 RAB22AQ9UL26 194 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms