RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 LHX4Q969G2 390 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 FAM198AQ9UFP1 575 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 EMCNQ9ULC0 261 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 BOLA1Q9Y3E2 137 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 MT-ATP6P00846 226 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SELENBP1Q13228 472 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 CTF1Q16619 201 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 RPS26P11Q5JNZ5 115 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 STUMQ69YW2 141 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 TRNP1Q6NT89 227 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ZDHHC22Q8N966 263 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 CLCF1Q9UBD9 225 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 DNAJB11Q9UBS4 358 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 OR6C76A6NM76 312 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 M0R2Z0 102 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 USP2O75604 605 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ORM1P02763 201 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GRM7Q14831 915 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF547Q8IVP9 402 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SMIM12Q96EX1 92 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 C2orf50Q96LR7 162 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ATP5SQ99766 215 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 FCGR2CP31995 323 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 NHLH2Q02577 135 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 EXT1Q16394 746 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SUSD1Q6UWL2 747 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 C12orf54Q6X4T0 127 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 FA2HQ7L5A8 372 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 LRIT1Q9P2V4 623 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SNRPEP62304 92 aaKnown RBP11.91□□□□□ -0.5
COL6A3-206ENST00000409809 PJVKQ0ZLH3 352 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 MARVELD1Q9BSK0 173 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 RNF208Q9H0X6 261 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 ANKRD36A6QL64 1941 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 GASTP01350 101 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 TMEM128Q5BJH2 165 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 GABRG1Q8N1C3 465 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 ARHGEF39Q8N4T4 335 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SEC22AQ96IW7 307 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 DEFB126Q9BYW3 111 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 CSNK1G1Q9HCP0 422 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 MANBALQ9NQG1 85 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 DLL4Q9NR61 685 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 ATAD5Q96QE3 1844 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 A0A1B0GTW7 788 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 NCBP2LA6PVI3 153 aaKnown RBP11.91□□□□□ -0.5
COL6A3-206ENST00000409809 H0YIV9 168 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 EGR3Q06889 387 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 TREML2Q5T2D2 321 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 C11orf87Q6NUJ2 197 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 TFAP2EQ6VUC0 442 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 OR10J5Q8NHC4 309 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 MMABQ96EY8 250 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-206ENST00000409809 PKIBQ9C010 78 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 ENPP1P22413 925 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SLC6A11P48066 632 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SPCS3P61009 180 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 TMEM184AQ6ZMB5 413 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF429Q86V71 674 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 OR13C5Q8NGS8 318 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 MSLNLQ96KJ4 702 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 RPL10LQ96L21 214 aaKnown RBP11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SLC23A1Q9UHI7 598 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 CYC1P08574 325 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 WNT7BP56706 349 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 IHHQ14623 411 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 OR1Q1Q15612 314 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 HAGHQ16775 308 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 DEFB134Q4QY38 66 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 CLEC14AQ86T13 490 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SMOQ99835 787 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 CBLCQ9ULV8 474 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 TOGARAM1Q9Y4F4 1720 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 TRBV4-1A0A0J9YWV2 114 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SUSD5O60279 629 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 HTRA3P83110 453 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 EIF4E3Q8N5X7 224 aaKnown RBP11.91□□□□□ -0.5
COL6A3-206ENST00000409809 DMBX1Q8NFW5 382 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 OR14J1Q9UGF5 321 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 RGPD5Q99666 1765 aa11.91□□□□□ -0.5
COL6A3-206ENST00000409809 SLC31A1O15431 190 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 FOXB2Q5VYV0 432 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 AMIGO3Q86WK7 504 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 SLC35G3Q8N808 338 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 NUDT22Q9BRQ3 303 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 MRPS28Q9Y2Q9 187 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 COL1A1P02452 1464 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 hCG_1809904A0A1W2PP81 198 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 A0A1W2PPE2 198 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 A0A1W2PR64 198 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 A0A1W2PRV1 198 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 CDRT15L2A8MXV6 281 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 LILRB3O75022 631 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 SORBS2O94875 1100 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 CHRM4P08173 479 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 GALR1P47211 349 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 PCBP4P57723 403 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 ETFDHQ16134 617 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 MFSD4AQ8N468 514 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 ACHEP22303 614 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms