RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RAP1AP62834 184 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ERVK-25P63136 954 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 C1DQ13901 141 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 PTGES3Q15185 160 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 PGGHGQ32M88 737 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 C10orf128Q5T292 105 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 TSPO2Q5TGU0 170 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 FBXW9Q5XUX1 488 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 LPCAT4Q643R3 524 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 C12orf73Q69YU5 71 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ACSM5Q6NUN0 579 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 SLC27A4Q6P1M0 643 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ZNF474Q6S9Z5 364 aaPredicted RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 Q6ZS46 218 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 Q6ZT83 130 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 LINGO2Q7L985 606 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 AAED1Q7RTV5 226 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 IGFN1Q86VF2 1251 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ZNF610Q8N9Z0 462 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 POMGNT2Q8NAT1 580 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 WFDC11Q8NEX6 87 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 NOXO1Q8NFA2 376 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 TEX47Q8TBZ9 253 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 FNDC8Q8TC99 324 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 FAM222BQ8WU58 562 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 HDAC2Q92769 488 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 PIK3IP1Q96FE7 263 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 Q96M85 177 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ZNF570Q96NI8 536 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 WFIKKN1Q96NZ8 548 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 MBOAT4Q96T53 435 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 PITX2Q99697 317 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ALG12Q9BV10 488 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 EMC6Q9BV81 110 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 TSSK6Q9BXA6 273 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 NMNAT2Q9BZQ4 307 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 OR10A4Q9H209 315 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 SLCO5A1Q9H2Y9 848 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 C12orf49Q9H741 205 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 CMC2Q9NRP2 79 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 IL20RAQ9UHF4 553 aa8.07□□□□□ -1.12
VPS53-203ENST00000401468 ZNF346Q9UL40 294 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 NDRG4Q9ULP0 352 aaKnown RBP8.07□□□□□ -1.12
VPS53-203ENST00000401468 PRSS37A4D1T9 235 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 SLC16A6O15403 523 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 IGHG1P01857 330 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 NR2C1P13056 603 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 CD99P14209 185 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 HIST1H1CP16403 213 aaKnown RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 CDH2P19022 906 aaPredicted RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 DNASE1P24855 282 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 RPL4P36578 427 aaKnown RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 ACVR1BP36896 505 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 POLR2IP36954 125 aaKnown RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 PTDSS1P48651 473 aaKnown RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 KRR1Q13601 381 aaKnown RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 KEAP1Q14145 624 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 MELKQ14680 651 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 GINS1Q14691 196 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 P2RY6Q15077 328 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 NRN1LQ496H8 165 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 PHYHD1Q5SRE7 291 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 THEM4Q5T1C6 240 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 C1QTNF12Q5T7M4 302 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 NIPAL3Q6P499 406 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 LRFN4Q6PJG9 635 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 SLC25A47Q6Q0C1 308 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 CASP12Q6UXS9 341 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 SPNS3Q6ZMD2 512 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 BEND4Q6ZU67 534 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 FOXL2NBQ6ZUU3 175 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 PTCHD4Q6ZW05 846 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 ZBTB46Q86UZ6 589 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 NPEPL1Q8NDH3 523 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 ZNF566Q969W8 418 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 APH1AQ96BI3 265 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 RASD2Q96D21 266 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 ERMAPQ96PL5 475 aaPredicted RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 IFT27Q9BW83 186 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 TOR3AQ9H497 397 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 UBTD1Q9HAC8 227 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 SLC7A10Q9NS82 523 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 SMPD3Q9NY59 655 aaPredicted RBP8.06□□□□□ -1.12
VPS53-203ENST00000401468 ELOVL5Q9NYP7 299 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 GRHPRQ9UBQ7 328 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 PRSS50Q9UI38 385 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 PROCRQ9UNN8 238 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 IER3IP1Q9Y5U9 82 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 NBEAL1Q6ZS30 2694 aa8.06□□□□□ -1.12
VPS53-203ENST00000401468 RTTNQ86VV8 2226 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 PLCE1Q9P212 2302 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 TEX13CA0A0J9YWL9 993 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 SLC22A23A1A5C7 686 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 FAM221AA4D161 298 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 ZNF726A6NNF4 738 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 H3BN98 237 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 SURF4O15260 269 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 UPK3AO75631 287 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 ATE1O95260 518 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 SNAP29O95721 258 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms