RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SH3GL3Q99963 347 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 USB1Q9BQ65 265 aaKnown RBP19.38■□□□□ 0.69
SHMT1-203ENST00000354098 HCAR1Q9BXC0 346 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 C1QTNF6Q9BXI9 259 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 PTPN13Q12923 2485 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 IGLV1-36A0A0B4J1U3 117 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 M0R129 80 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 IFNGP01579 166 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 HMGN1P05114 100 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 SGCAQ16586 387 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 SLX4IPQ5VYV7 408 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 OTPQ5XKR4 325 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 SEZ6L2Q6UXD5 910 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 MUCL1Q96DR8 90 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 TOR3AQ9H497 397 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 MED20Q9H944 212 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 ZNF224Q9NZL3 707 aa19.37■□□□□ 0.69
SHMT1-203ENST00000354098 DLGAP1O14490 977 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 KHDRBS3O75525 346 aaKnown RBP19.36■□□□□ 0.69
SHMT1-203ENST00000354098 MPZL1O95297 269 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 GYPBP06028 91 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 PATE4P0C8F1 98 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 CLUP10909 449 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 ZNF3P17036 446 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 CRABP1P29762 137 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 HOXC12P31275 282 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 MRPS34P82930 218 aaKnown RBP19.36■□□□□ 0.69
SHMT1-203ENST00000354098 SNAPC1Q16533 368 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 ZBTB46Q86UZ6 589 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 LRRC18Q8N456 261 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 FGFBP3Q8TAT2 258 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 FAM222BQ8WU58 562 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 NRG4Q8WWG1 115 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 PTP4A1Q93096 173 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 NMNAT2Q9BZQ4 307 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 GRIP2Q9C0E4 1043 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 ANKHD1Q8IWZ3 2542 aaKnown RBP19.36■□□□□ 0.69
SHMT1-203ENST00000354098 HLA-HP01893 362 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 OR8G3PP0DMU2 310 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 PYCR1P32322 319 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 CAPZA2P47755 286 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 CENPAP49450 140 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 UBE2NP61088 152 aaKnown RBP19.36■□□□□ 0.69
SHMT1-203ENST00000354098 C12orf73Q69YU5 71 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 FOXL2NBQ6ZUU3 175 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 OR51L1Q8NGJ5 315 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 OTULINQ96BN8 352 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 TEX12Q9BXU0 123 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 SIAEQ9HAT2 523 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 ZNF226Q9NYT6 803 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 NPAP1Q9NZP6 1156 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 AMDHD2Q9Y303 409 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 FKBP7Q9Y680 259 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 PRR14LQ5THK1 2151 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 BAHCC1Q9P281 2608 aa19.36■□□□□ 0.69
SHMT1-203ENST00000354098 ARPC4-TTLL3A0A0A6YYG9 625 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 PRKYO43930 277 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 ATP6V1G2O95670 118 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 LAP3P28838 519 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 PIGFQ07326 219 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 RIPK1Q13546 671 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 UGT2A3Q6UWM9 527 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 GLB1L2Q8IW92 636 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 SLC38A2Q96QD8 506 aa19.35■□□□□ 0.69
SHMT1-203ENST00000354098 E9PQ18 207 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 CASKO14936 926 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 SIAH2O43255 324 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 HOXB1P14653 301 aaPredicted RBP19.34■□□□□ 0.69
SHMT1-203ENST00000354098 NPR2P20594 1047 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 NRN1LQ496H8 165 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 ZNF787Q6DD87 383 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 PLBD1Q6P4A8 553 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 DNM1P34Q6PK57 102 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 CPOQ8IVL8 374 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 PLEKHA8Q96JA3 519 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 RACGAP1Q9H0H5 632 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 NOX3Q9HBY0 568 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 EMC7Q9NPA0 242 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 HINT3Q9NQE9 182 aaKnown RBP19.34■□□□□ 0.69
SHMT1-203ENST00000354098 POLE4Q9NR33 117 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 B3GNT2Q9NY97 397 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 KCNN3Q9UGI6 736 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 HECTD1Q9ULT8 2610 aa19.34■□□□□ 0.69
SHMT1-203ENST00000354098 CD79AP11912 226 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 SPI1P17947 270 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 CRYGSP22914 178 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 SLC25A1P53007 311 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 EFNB1P98172 346 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 FAM27BQ5VT28 67 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 PACRGLQ8N7B6 248 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 PROKR2Q8NFJ6 384 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 OR2T4Q8NH00 348 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 SLC24A3Q9HC58 644 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 OBP2BQ9NPH6 170 aa19.33■□□□□ 0.69
SHMT1-203ENST00000354098 SMPD3Q9NY59 655 aaPredicted RBP19.33■□□□□ 0.69
SHMT1-203ENST00000354098 PRR23D1E9PI22 279 aaPredicted RBP19.33■□□□□ 0.68
SHMT1-203ENST00000354098 FARS2O95363 451 aaKnown RBP19.33■□□□□ 0.68
SHMT1-203ENST00000354098 WNT11O96014 354 aa19.33■□□□□ 0.68
SHMT1-203ENST00000354098 PRR23D2P0DMB1 279 aaPredicted RBP19.33■□□□□ 0.68
SHMT1-203ENST00000354098 GAAP10253 952 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms