RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 NMNAT3Q96T66 252 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 LIME1Q9H400 295 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 MOV10Q9HCE1 1003 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 B3GNT2Q9NY97 397 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 CRNNQ9UBG3 495 aaPredicted RBP13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 REV1Q9UBZ9 1251 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 G3V2T6 193 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 H3BNX3 289 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC16A7O60669 478 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 RAB36O95755 333 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 NPR2P20594 1047 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 POU1F1P28069 291 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 ARR3P36575 388 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 GUCA1AP43080 201 aaPredicted RBP13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 PTDSS1P48651 473 aaKnown RBP13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 NRN1LQ496H8 165 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC22A25Q6T423 547 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 IQCF1Q8N6M8 205 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 OR52E2Q8NGJ4 325 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 OR4Q3Q8NH05 313 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 FGFBP3Q8TAT2 258 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 AKAP1Q92667 903 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 NEUROG1Q92886 237 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 CENPNQ96H22 339 aaPredicted RBP13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 NUAK2Q9H093 628 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 SIAEQ9HAT2 523 aa13.84□□□□□ -0.19
CCDC28A-201ENST00000332797 SHISA9B4DS77 424 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 KHDRBS3O75525 346 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 IGKV3-15P01624 115 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 IGLV1-44P01699 117 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 CECR9P0C854 216 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 OSMP13725 252 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 GIPRP48546 466 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 DAPP51397 102 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 CDH11P55287 796 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 RAB1AP62820 205 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 SLC36A2Q495M3 483 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 FAHD1Q6P587 224 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 FOXL2NBQ6ZUU3 175 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF771Q7L3S4 317 aaPredicted RBP13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 CDH24Q86UP0 819 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 MYPOPQ86VE0 399 aaPredicted RBP13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 ZDHHC13Q8IUH4 622 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 SVOPLQ8N434 492 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 LNX2Q8N448 690 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 FAM169BQ8N8A8 192 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 ICA1LQ8NDH6 482 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 RADILQ96JH8 1075 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 TSSK2Q96PF2 358 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 SNX18Q96RF0 628 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 PKP2Q99959 881 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 KCNS3Q9BQ31 491 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 KCNN2Q9H2S1 579 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 FN3KQ9H479 309 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 RNF121Q9H920 327 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 RPRD1BQ9NQG5 326 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 PAPOLBQ9NRJ5 636 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 POU2F3Q9UKI9 436 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 BAIAP2Q9UQB8 552 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 POLQO75417 2590 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 PDZD2O15018 2839 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 ABCA4P78363 2273 aa13.83□□□□□ -0.2
CCDC28A-201ENST00000332797 SAC3D1A6NKF1 404 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 ANKRD65E5RJM6 399 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 HS3ST1O14792 307 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 MSR1P21757 451 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 LAP3P28838 519 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 CRABP1P29762 137 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 CENPAP49450 140 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 PGGHGQ32M88 737 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 C3orf36Q3SXR2 165 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF672Q499Z4 452 aaPredicted RBP13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 TMEM53Q6P2H8 277 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 DNM1P34Q6PK57 102 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 PAMR1Q6UXH9 720 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 DPPA2Q7Z7J5 298 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 DEPDC4Q8N2C3 294 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 LILRB1Q8NHL6 650 aaPredicted RBP13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 DNAJC9Q8WXX5 260 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 GABARAPL1Q9H0R8 117 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 CCNB1IP1Q9NPC3 277 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 POLE4Q9NR33 117 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 OAZ3Q9UMX2 235 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 PLEKHA6Q9Y2H5 1048 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 COA3Q9Y2R0 106 aaPredicted RBP13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 NOTCH2Q04721 2471 aa13.82□□□□□ -0.2
CCDC28A-201ENST00000332797 OR6C68A6NDL8 312 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 ATP6V1G2-DDX39BF2Z307 99 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 DCTN6O00399 190 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 MGRN1O60291 552 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 CRYAAP02489 173 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 NAAAQ02083 359 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 DBPQ10586 325 aaPredicted RBP13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 RAB39AQ14964 217 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 FAM27BQ5VT28 67 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 GLB1L2Q8IW92 636 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 CYB561A3Q8NBI2 242 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 SLC37A3Q8NCC5 494 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 NPEPL1Q8NDH3 523 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms