RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 MRPL13Q9BYD1 178 aaKnown RBP11.95□□□□□ -0.5
LINC00339-211ENST00000641009 INIPQ9NRY2 104 aa11.95□□□□□ -0.5
LINC00339-211ENST00000641009 A0A1W2PPW3 197 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 PIP5K1CO60331 668 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 ENTPD5O75356 428 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 TRMUO75648 421 aaKnown RBP11.94□□□□□ -0.5
LINC00339-211ENST00000641009 VIMP08670 466 aaKnown RBP11.94□□□□□ -0.5
LINC00339-211ENST00000641009 ACADSP16219 412 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 HNF1AP20823 631 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 COL8A2P25067 703 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 DAP3P51398 398 aaKnown RBP11.94□□□□□ -0.5
LINC00339-211ENST00000641009 ZNF84P51523 738 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 ERVS71-1P61550 626 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 MAPRE2Q15555 327 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 CR1LQ2VPA4 569 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 KRTAP24-1Q3LI83 254 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 SLC36A2Q495M3 483 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 CYBRD1Q53TN4 286 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 TMEM53Q6P2H8 277 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 TPD52L3Q96J77 140 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 SEPHS2Q99611 448 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 POLR2J2Q9GZM3 115 aaKnown RBP11.94□□□□□ -0.5
LINC00339-211ENST00000641009 POLR2J3Q9H1A7 115 aaKnown RBP11.94□□□□□ -0.5
LINC00339-211ENST00000641009 MRGBPQ9NV56 204 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 WNK2Q9Y3S1 2297 aa11.94□□□□□ -0.5
LINC00339-211ENST00000641009 FAM220BPB1ANY3 271 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 NCR1O76036 304 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 SLC2A10O95528 541 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 CLPTM1O96005 669 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 IGF2P01344 180 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 IFNA14P01570 189 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 TSPAN19P0C672 248 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 FUT4P22083 530 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 CDAP32320 146 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 KDELR2P33947 212 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 LAPTM4AQ15012 233 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 ARMC4Q5T2S8 1044 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 RGS7BPQ6MZT1 257 aaPredicted RBP11.93□□□□□ -0.5
LINC00339-211ENST00000641009 LINC01356Q8N9X3 169 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 PCYOX1LQ8NBM8 494 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 RBM15BQ8NDT2 890 aaKnown RBP11.93□□□□□ -0.5
LINC00339-211ENST00000641009 OR2T12Q8NG77 320 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 HPS1Q92902 700 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 TSPAN32Q96QS1 320 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 NARFLQ9H6Q4 476 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 CDH20Q9HBT6 801 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 GID8Q9NWU2 228 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 GMPR2Q9P2T1 348 aaKnown RBP11.93□□□□□ -0.5
LINC00339-211ENST00000641009 MED31Q9Y3C7 131 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 TANC2Q9HCD6 1990 aa11.93□□□□□ -0.5
LINC00339-211ENST00000641009 IGKV1D-43A0A0B4J1Z2 117 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 LCKP06239 509 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 MMP7P09237 267 aaPredicted RBP11.92□□□□□ -0.5
LINC00339-211ENST00000641009 THBS2P35442 1172 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 MAGEB1P43366 347 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 ZNF133P52736 654 aaPredicted RBP11.92□□□□□ -0.5
LINC00339-211ENST00000641009 CDH15P55291 814 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 FMODQ06828 376 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 NKPD1Q17RQ9 610 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 TBC1D28Q2M2D7 210 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 NRN1LQ496H8 165 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 C10orf128Q5T292 105 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 HDDC2Q7Z4H3 204 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 DPPA2Q7Z7J5 298 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 MICU2Q8IYU8 434 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 POU5F2Q8N7G0 328 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 ICA1LQ8NDH6 482 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 LIPHQ8WWY8 451 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 HDAC2Q92769 488 aaKnown RBP11.92□□□□□ -0.5
LINC00339-211ENST00000641009 YIPF5Q969M3 257 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 RCN3Q96D15 328 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 TAAR3PQ9P1P4 343 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 ARMCX1Q9P291 453 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 A4GNTQ9UNA3 340 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 UGT2A1Q9Y4X1 527 aa11.92□□□□□ -0.5
LINC00339-211ENST00000641009 IQCMA0A1B0GVH7 501 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 SLC22A23A1A5C7 686 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 CENPBD1B2RD01 187 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 SNAP29O95721 258 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 THRBP10828 461 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 ZNF250P15622 560 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 ACHEP22303 614 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 GPR6P46095 362 aaPredicted RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 YAP1P46937 504 aaKnown RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 UCP2P55851 309 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 KLF3P57682 345 aaPredicted RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 SELENOWP63302 87 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 CD47Q08722 323 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 TOP3AQ13472 1001 aaPredicted RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 MEX3DQ86XN8 651 aaKnown RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 CPEB3Q8NE35 698 aaKnown RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 SYNPRQ8TBG9 265 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 NSMAFQ92636 917 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 RDH5Q92781 318 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 NABP1Q96AH0 204 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 NMD3Q96D46 503 aaKnown RBP11.91□□□□□ -0.5
LINC00339-211ENST00000641009 C1orf159Q96HA4 380 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 PRRC1Q96M27 445 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 C1orf198Q9H425 327 aa11.91□□□□□ -0.5
LINC00339-211ENST00000641009 ZNF275Q9NSD4 429 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms