RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MRPS30Q9NP92 439 aaKnown RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 MYOZ1Q9NP98 299 aaPredicted RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 GSN-AS1Q9NRJ2 163 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 RSPH14Q9UHP6 348 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 C15orf41Q9Y2V0 281 aa3.65□□□□□ -1.83
LINC00540-201ENST00000611481 PLECQ15149 4684 aaKnown RBP3.65□□□□□ -1.83
LINC00540-201ENST00000611481 WNK2Q9Y3S1 2297 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 A0A075B6Q4 140 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 IGKV3D-11A0A0A0MRZ8 115 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 A0A0U1RQV5 110 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 A0A1W2PPV9 198 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CLPSL1A2RUU4 121 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 HELTA6NFD8 242 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 HAT1O14929 419 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 STX7O15400 261 aaKnown RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CHST10O43529 356 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SNNO75324 88 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 TRIM3O75382 744 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 REM1O75628 298 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SRP72O76094 671 aaKnown RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 IGLV2-11P01706 119 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 RPN2P04844 631 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SFTPBP07988 381 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SLC35E2P0CK97 266 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 PAICSP22234 425 aaKnown RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 STIP1P31948 543 aaKnown RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ADRA1AP35348 466 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CEBPDP49716 269 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ZP1P60852 638 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ASPHQ12797 758 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF791Q3KP31 576 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 IL23RQ5VWK5 629 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 C8orf82Q6P1X6 216 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SIGLEC15Q6ZMC9 328 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CHMP1BQ7LBR1 199 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 GLT6D1Q7Z4J2 308 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CLIP4Q8N3C7 705 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CLDN19Q8N6F1 224 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 LRRC57Q8N9N7 239 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 CCDC63Q8NA47 563 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 FAM83FQ8NEG4 500 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 OR10G3Q8NGC4 313 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 OR8K3Q8NH51 312 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 OR51F2Q8NH61 342 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 MAGEC3Q8TD91 643 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 BLOC1S5Q8TDH9 187 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SSMEM1Q8WWF3 244 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 TAAR8Q969N4 342 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ERGIC1Q969X5 290 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 GRAMD2BQ96HH9 432 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 MCEEQ96PE7 176 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 BTBD10Q9BSF8 475 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ALG12Q9BV10 488 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 NPFFR1Q9GZQ6 430 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 TRABDQ9H4I3 376 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 NARFLQ9H6Q4 476 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 SEBOXQ9HB31 216 aaPredicted RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 PNRC2Q9NPJ4 139 aaKnown RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 MALT1Q9UDY8 824 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 RPUSD1Q9UJJ7 312 aaKnown RBP3.64□□□□□ -1.83
LINC00540-201ENST00000611481 HEATR5BQ9P2D3 2071 aa3.64□□□□□ -1.83
LINC00540-201ENST00000611481 ARFGEF3Q5TH69 2177 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 MUC4Q99102 2169 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 IGKV1-8A0A0C4DH67 115 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 FAM240BA0A1B0GVZ2 78 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 WI2-2373I1.2A0A1W2PRP0 233 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 SIGLEC16A6NMB1 481 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 FAM90A26D6RGX4 464 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 PRSS46E5RG02 174 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 GOLGA8MH3BSY2 632 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 CLDN34H7C241 214 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 DVL1O14640 695 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 DNALI1O14645 258 aaPredicted RBP3.63□□□□□ -1.83
LINC00540-201ENST00000611481 SCO2O43819 266 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 MFSD11O43934 449 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 GMNNO75496 209 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 SERPINA3P01011 423 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 NGFP01138 241 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 CRYBA1P05813 215 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 STAG3L3P0CL85 134 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 PGCP20142 388 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 PSMB1P20618 241 aaKnown RBP3.63□□□□□ -1.83
LINC00540-201ENST00000611481 IL32P24001 234 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 GIFP27352 417 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 FOXN2P32314 431 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 DEKP35659 375 aaKnown RBP3.63□□□□□ -1.83
LINC00540-201ENST00000611481 CAPGP40121 348 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 BDKRB1P46663 353 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 CLDN15P56746 228 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 SELENOVP59797 346 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 RPL23AP62750 156 aaKnown RBP3.63□□□□□ -1.83
LINC00540-201ENST00000611481 CBX1P83916 185 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 OGDHQ02218 1023 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 RELQ04864 619 aaPredicted RBP3.63□□□□□ -1.83
LINC00540-201ENST00000611481 FUT7Q11130 342 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 PLA2G7Q13093 441 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 P2RY6Q15077 328 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 KRT31Q15323 416 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 PHKG1Q16816 387 aa3.63□□□□□ -1.83
LINC00540-201ENST00000611481 TATDN3Q17R31 274 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms