RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 C1orf198Q9H425 327 aa10.71□□□□□ -0.69
SS18-225ENST00000585121 RHCGQ9UBD6 479 aa10.71□□□□□ -0.69
SS18-225ENST00000585121 JMJD1CQ15652 2540 aa10.71□□□□□ -0.7
SS18-225ENST00000585121 FN1P02751 2386 aaKnown RBP10.7□□□□□ -0.7
SS18-225ENST00000585121 SLC22A23A1A5C7 686 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 EFCAB9A8MZ26 197 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 J3KTA2 159 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 NDUFS8O00217 210 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 CD5LO43866 347 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 SERPINA5P05154 406 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 PATE4P0C8F1 98 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 SLC9A3P48764 834 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 PRKCDQ05655 676 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 LOXL1Q08397 574 aaPredicted RBP10.7□□□□□ -0.7
SS18-225ENST00000585121 CD47Q08722 323 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 BNIP1Q12981 228 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 TOP3AQ13472 1001 aaPredicted RBP10.7□□□□□ -0.7
SS18-225ENST00000585121 KRT72Q14CN4 511 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 HIST3H3Q16695 136 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 FAM205BPQ63HN1 556 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 SVOPLQ8N434 492 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 ZNF540Q8NDQ6 660 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 OR4K5Q8NGD3 323 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 OR1J2Q8NGS2 313 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 FNDC8Q8TC99 324 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 TNFRSF13CQ96RJ3 184 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 MRPL13Q9BYD1 178 aaKnown RBP10.7□□□□□ -0.7
SS18-225ENST00000585121 ANKRD19PQ9H560 264 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 ZNF224Q9NZL3 707 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 ABCD2Q9UBJ2 740 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 SLC7A8Q9UHI5 535 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 SAMD4AQ9UPU9 718 aaKnown RBP10.7□□□□□ -0.7
SS18-225ENST00000585121 HIF3AQ9Y2N7 669 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 SNX13Q9Y5W8 968 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 ABCA2Q9BZC7 2435 aa10.7□□□□□ -0.7
SS18-225ENST00000585121 IQCMA0A1B0GVH7 501 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 SH3PXD2BA1X283 911 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 A6NIZ1 184 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 TSPAN19P0C672 248 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 ZNF35P13682 527 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 NCK1P16333 377 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 USF1P22415 310 aaPredicted RBP10.69□□□□□ -0.7
SS18-225ENST00000585121 GLRXP35754 106 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 EVX1P49640 407 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 SELENOVP59797 346 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 CTXN1P60606 82 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 RAP1BP61224 184 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 RPL27P61353 136 aaKnown RBP10.69□□□□□ -0.7
SS18-225ENST00000585121 RAP1AP62834 184 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 HSF2Q03933 536 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 RUNX1T1Q06455 604 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 C10orf128Q5T292 105 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 ARMC4Q5T2S8 1044 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 GLYATQ6IB77 296 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 MBOAT2Q6ZWT7 520 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 RBM15BQ8NDT2 890 aaKnown RBP10.69□□□□□ -0.7
SS18-225ENST00000585121 SLC30A7Q8NEW0 376 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 OR51A7Q8NH64 312 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 NEU4Q8WWR8 484 aaPredicted RBP10.69□□□□□ -0.7
SS18-225ENST00000585121 ZNF75AQ96N20 296 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 SEPHS2Q99611 448 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 DOK1Q99704 481 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 ALG12Q9BV10 488 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 SIAEQ9HAT2 523 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 SMURF2Q9HAU4 748 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 CDH20Q9HBT6 801 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 CCNB1IP1Q9NPC3 277 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 KRCC1Q9NPI7 259 aaPredicted RBP10.69□□□□□ -0.7
SS18-225ENST00000585121 YAE1D1Q9NRH1 226 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 EGFL7Q9UHF1 273 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 TMEM5Q9Y2B1 443 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 ENPP4Q9Y6X5 453 aa10.69□□□□□ -0.7
SS18-225ENST00000585121 A0A087WUU8 490 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 LOC390937A0A1W2PQ73 354 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 FFAR1O14842 300 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 LY6HO94772 140 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 UBOX5O94941 541 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 MAKP20794 623 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 APLNRP35414 380 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 RPL4P36578 427 aaKnown RBP10.68□□□□□ -0.7
SS18-225ENST00000585121 ZNF133P52736 654 aaPredicted RBP10.68□□□□□ -0.7
SS18-225ENST00000585121 KRTAP1-1Q07627 177 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 SGCAQ16586 387 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 TBC1D28Q2M2D7 210 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 THEM4Q5T1C6 240 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 LRRC18Q8N456 261 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 FGFBP3Q8TAT2 258 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 NSMAFQ92636 917 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 MRPL24Q96A35 216 aaKnown RBP10.68□□□□□ -0.7
SS18-225ENST00000585121 NMNAT1Q9HAN9 279 aaPredicted RBP10.68□□□□□ -0.7
SS18-225ENST00000585121 MAN2C1Q9NTJ4 1040 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 ZNF346Q9UL40 294 aaKnown RBP10.68□□□□□ -0.7
SS18-225ENST00000585121 ABCA1O95477 2261 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 TRAV27A0A087WT01 109 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 TMEM129A0AVI4 362 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 SYNGR3O43761 229 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 GPRIN2O60269 458 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 SLC2A10O95528 541 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 IGHMP01871 453 aa10.68□□□□□ -0.7
SS18-225ENST00000585121 H1F0P07305 194 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms