RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 WACQ9BTA9 647 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 TP63Q9H3D4 680 aaPredicted RBP13.54□□□□□ -0.24
SS18-215ENST00000580642 ADGRL4Q9HBW9 690 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 LUZP4Q9P127 313 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 ERVK-18Q9QC07 812 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 ERGIC3Q9Y282 383 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 MED12Q93074 2177 aa13.54□□□□□ -0.24
SS18-215ENST00000580642 TMEM129A0AVI4 362 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 H7C1C5 153 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 DCTN6O00399 190 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 TGM6O95932 706 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 GYPBP06028 91 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 HTR1AP08908 422 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 QDPRP09417 244 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 CLUP10909 449 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 ABOP16442 354 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 LAP3P28838 519 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 TTKP33981 857 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 RPL5P46777 297 aaKnown RBP13.53□□□□□ -0.24
SS18-215ENST00000580642 SELENOPP49908 381 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 ZNF84P51523 738 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 LCN6P62502 163 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 GUSBP1Q15486 140 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 PCK2Q16822 640 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 C1orf185Q5T7R7 199 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 LRFN4Q6PJG9 635 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 GFRALQ6UXV0 394 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 FAM214BQ7L5A3 538 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 SHFQ7M4L6 423 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 TIGD4Q8IY51 512 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 GPR137CQ8N3F9 429 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 OR51G2Q8NGK0 314 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 CPT1CQ8TCG5 803 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 HAVCR2Q8TDQ0 301 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 APH1AQ96BI3 265 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 MND1Q9BWT6 205 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 CCDC90BQ9GZT6 254 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 SLCO5A1Q9H2Y9 848 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 BATF3Q9NR55 127 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 ASF1BQ9NVP2 202 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 EMC9Q9Y3B6 208 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 ZNF407Q9C0G0 2248 aa13.53□□□□□ -0.24
SS18-215ENST00000580642 LAMA5O15230 3695 aa13.52□□□□□ -0.24
SS18-215ENST00000580642 DNAJC13O75165 2243 aa13.52□□□□□ -0.24
SS18-215ENST00000580642 TTLL8A6PVC2 850 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 DHHO43323 396 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 TMCC2O75069 709 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 WISP2O76076 250 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 TPOP07202 933 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 NPR2P20594 1047 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 C21orf33P30042 268 aaPredicted RBP13.52□□□□□ -0.25
SS18-215ENST00000580642 AGTR1P30556 359 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 PYCR1P32322 319 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 CDH15P55291 814 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 EMX1Q04741 257 aaPredicted RBP13.52□□□□□ -0.25
SS18-215ENST00000580642 ZNF585AQ6P3V2 769 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 C19orf48Q6RUI8 117 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 TUSC5Q8IXB3 177 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 ST6GALNAC3Q8NDV1 305 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 SLC26A10Q8NG04 563 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 OR5M9Q8NGP3 310 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 OR6K3Q8NGY3 331 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 OR52N1Q8NH53 320 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 ZMYND19Q96E35 227 aaPredicted RBP13.52□□□□□ -0.25
SS18-215ENST00000580642 TSSK2Q96PF2 358 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 INTS14Q96SY0 518 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 ULBP2Q9BZM5 246 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 ACOT13Q9NPJ3 140 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 COA3Q9Y2R0 106 aaPredicted RBP13.52□□□□□ -0.25
SS18-215ENST00000580642 COMMD3-BMI1R4GMX3 469 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 ACACBO00763 2458 aa13.52□□□□□ -0.25
SS18-215ENST00000580642 MT-ND2P03891 347 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 TFAP2AP05549 437 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 GAAP10253 952 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 ATP6V1B1P15313 513 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 ZNF823P16415 610 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 PCMT1P22061 227 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 OR3A2P47893 321 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 LSM6P62312 80 aaKnown RBP13.51□□□□□ -0.25
SS18-215ENST00000580642 ACTA2P62736 377 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 ACTG2P63267 376 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 MRPS34P82930 218 aaKnown RBP13.51□□□□□ -0.25
SS18-215ENST00000580642 UBE2UQ5VVX9 321 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 TMPRSS11AQ6ZMR5 421 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 KCTD8Q6ZWB6 473 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 RHOUQ7L0Q8 258 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 KCTD20Q7Z5Y7 419 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 NANOGP1Q8N7R0 232 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 OR4F15Q8NGB8 312 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 ZNRF4Q8WWF5 429 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 ASB17Q8WXJ9 295 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 RHNO1Q9BSD3 238 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 WDR76Q9H967 626 aa13.51□□□□□ -0.25
SS18-215ENST00000580642 CAB39Q9Y376 341 aaPredicted RBP13.51□□□□□ -0.25
SS18-215ENST00000580642 DAPL1A0PJW8 107 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 HSPB2A8KAH6 182 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 C12orf71A8MTZ7 269 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 ZNF670-ZNF695F2Z2N8 137 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 SLC19A2O60779 497 aa13.5□□□□□ -0.25
SS18-215ENST00000580642 HLA-DQA2P01906 255 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms