RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZNF442Q9H7R0 627 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF346Q9UL40 294 aaKnown RBP20.69■□□□□ 0.9
SHMT1-206ENST00000579558 TMEM5Q9Y2B1 443 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 VSTM5A8MXK1 200 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 B9A039 149 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 ARPC2O15144 300 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 DIRAS1O95057 198 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 SLC2A10O95528 541 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 NR2C1P13056 603 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF133P52736 654 aaPredicted RBP20.68■□□□□ 0.9
SHMT1-206ENST00000579558 FHL1Q13642 323 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 DAG1Q14118 895 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 RAB39AQ14964 217 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 C10orf128Q5T292 105 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 KRT80Q6KB66 452 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 TMPRSS11FQ6ZWK6 438 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 PYURFQ96I23 114 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 KCNK17Q96T54 332 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 RNF121Q9H920 327 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 ARFGEF3Q5TH69 2177 aa20.68■□□□□ 0.9
SHMT1-206ENST00000579558 NIPBLQ6KC79 2804 aaeCLIP20.68■□□□□ 0.9
SHMT1-206ENST00000579558 CDC42EP2O14613 210 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 ITGA2P17301 1181 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 NPR2P20594 1047 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 FMODQ06828 376 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 EFNB3Q15768 340 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 NRN1LQ496H8 165 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 FAM205BPQ63HN1 556 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 TMEM53Q6P2H8 277 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 SLC16A14Q7RTX9 510 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 DPPA2Q7Z7J5 298 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 CCDC197Q8NCU1 140 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 FAM46AQ96IP4 442 aaKnown RBP20.67■□□□□ 0.9
SHMT1-206ENST00000579558 TSPAN32Q96QS1 320 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 RHNO1Q9BSD3 238 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 ALG12Q9BV10 488 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 REG4Q9BYZ8 158 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 SMURF2Q9HAU4 748 aa20.67■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF35P13682 527 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 NR4A1P22736 598 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 RPL4P36578 427 aaKnown RBP20.66■□□□□ 0.9
SHMT1-206ENST00000579558 EFNA4P52798 201 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 SLC36A2Q495M3 483 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 SPATS1Q496A3 300 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 ZBED5Q49AG3 693 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 CLEC2AQ6UVW9 174 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 MAPK1IP1LQ8NDC0 245 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 NSMAFQ92636 917 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 NMD3Q96D46 503 aaKnown RBP20.66■□□□□ 0.9
SHMT1-206ENST00000579558 NSL1Q96IY1 281 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 NDEL1Q9GZM8 345 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 PLK3Q9H4B4 646 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 SPEF1Q9Y4P9 236 aa20.66■□□□□ 0.9
SHMT1-206ENST00000579558 IGKV1D-43A0A0B4J1Z2 117 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 TRBV4-1A0A0J9YWV2 114 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 A6NIZ1 184 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 B2RBV5 119 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 SEMG1P04279 462 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 SERPINA5P05154 406 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 DSCR9P59020 149 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 RAP1BP61224 184 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 RAP1AP62834 184 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 ERVK-25P63136 954 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF584Q8IVC4 421 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 LRRC18Q8N456 261 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF525Q8N782 197 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 OR52J3Q8NH60 311 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF519Q8TB69 540 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 FNDC8Q8TC99 324 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 MCUR1Q96AQ8 359 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 DHRS1Q96LJ7 313 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 RBP7Q96R05 134 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 KRCC1Q9NPI7 259 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-206ENST00000579558 UGT2A1Q9Y4X1 527 aa20.65■□□□□ 0.9
SHMT1-206ENST00000579558 CDAP32320 146 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 MRPS34P82930 218 aaKnown RBP20.64■□□□□ 0.89
SHMT1-206ENST00000579558 GALK2Q01415 458 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 IQCCQ4KMZ1 466 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 THEM4Q5T1C6 240 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 SLC25A47Q6Q0C1 308 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 SVOPLQ8N434 492 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 CLDN22Q8N7P3 220 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 SORCS2Q96PQ0 1159 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 VRK1Q99986 396 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-206ENST00000579558 KCNN2Q9H2S1 579 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 SIAEQ9HAT2 523 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 CMAHPQ9Y471 501 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 FKBP7Q9Y680 259 aa20.64■□□□□ 0.89
SHMT1-206ENST00000579558 IGHV4-30-2A0A087WSY4 118 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 MGRN1O60291 552 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 LY6HO94772 140 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 CD14P08571 375 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 ZNF26P17031 533 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-206ENST00000579558 OMPP47874 163 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 LIMS1P48059 325 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 SMIM11AP58511 58 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 SPIBQ01892 262 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 SEC23BQ15437 767 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 ARIH2OSQ8N7S6 290 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 SLC30A7Q8NEW0 376 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms