RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 KCTD14Q9BQ13 255 aaPredicted RBP17.87■□□□□ 0.45
CLN3-219ENST00000565778 SYT3Q9BQG1 590 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 REV1Q9UBZ9 1251 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 DUSP13Q9UII6 198 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 HIF3AQ9Y2N7 669 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 ABCA1O95477 2261 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 FFAR1O14842 300 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 SYNGR3O43761 229 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 STAMBPO95630 424 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 PTHP01270 115 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 NCK1P16333 377 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 MAKP20794 623 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 CTXN1P60606 82 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 PSME3P61289 254 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 RPS23P62266 143 aaKnown RBP17.86■□□□□ 0.45
CLN3-219ENST00000565778 CD47Q08722 323 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 TOP3AQ13472 1001 aaPredicted RBP17.86■□□□□ 0.45
CLN3-219ENST00000565778 FXNQ16595 210 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 MSMPQ1L6U9 139 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 NRN1LQ496H8 165 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 C6orf52Q5T4I8 152 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 ZNF730Q6ZMV8 503 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 RRM2BQ7LG56 351 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 CPLX4Q7Z7G2 160 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 OAFQ86UD1 273 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 MEX3DQ86XN8 651 aaKnown RBP17.86■□□□□ 0.45
CLN3-219ENST00000565778 NRMQ8IXM6 262 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 RNF113BQ8IZP6 322 aaKnown RBP17.86■□□□□ 0.45
CLN3-219ENST00000565778 OFCC1Q8IZS5 231 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 SLC30A7Q8NEW0 376 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 OR51A7Q8NH64 312 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 NSMAFQ92636 917 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 HDAC2Q92769 488 aaKnown RBP17.86■□□□□ 0.45
CLN3-219ENST00000565778 HSH2DQ96JZ2 352 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 RBP7Q96R05 134 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 SEPHS2Q99611 448 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 TPK1Q9H3S4 243 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 MS4A5Q9H3V2 200 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 CDH20Q9HBT6 801 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 SLC7A8Q9UHI5 535 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 ZNF346Q9UL40 294 aaKnown RBP17.86■□□□□ 0.45
CLN3-219ENST00000565778 FZR1Q9UM11 496 aa17.86■□□□□ 0.45
CLN3-219ENST00000565778 IQCMA0A1B0GVH7 501 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 SLC22A23A1A5C7 686 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 EFCAB9A8MZ26 197 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 MGRN1O60291 552 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 SLC2A10O95528 541 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 IGHV4-31P0DP07 118 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 CCL2P13500 99 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 CDAP32320 146 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 RPL27P61353 136 aaKnown RBP17.85■□□□□ 0.45
CLN3-219ENST00000565778 PRKCDQ05655 676 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 TAF11Q15544 211 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 SGCAQ16586 387 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 IGFN1Q86VF2 1251 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 LRP11Q86VZ4 500 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 CYP4Z1Q86W10 505 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 RBM15BQ8NDT2 890 aaKnown RBP17.85■□□□□ 0.45
CLN3-219ENST00000565778 OR1J2Q8NGS2 313 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 UBASH3BQ8TF42 649 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 ACOT11Q8WXI4 607 aaPredicted RBP17.85■□□□□ 0.45
CLN3-219ENST00000565778 MYLK2Q9H1R3 596 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 LRMDAQ9H2I8 198 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 C1orf198Q9H425 327 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 SIAEQ9HAT2 523 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 MAN2C1Q9NTJ4 1040 aa17.85■□□□□ 0.45
CLN3-219ENST00000565778 A0A087WUU8 490 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 NPIPB13A6NJU9 1138 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 NPIPB4C9JG80 1138 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 M0R233 179 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 IGFBP1P08833 259 aaPredicted RBP17.84■□□□□ 0.45
CLN3-219ENST00000565778 FAM157BP0CG42 384 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 NR2C1P13056 603 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 APEHP13798 732 aaKnown RBP17.84■□□□□ 0.45
CLN3-219ENST00000565778 TCN1P20061 433 aaPredicted RBP17.84■□□□□ 0.45
CLN3-219ENST00000565778 GZMKP49863 264 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 ZNF133P52736 654 aaPredicted RBP17.84■□□□□ 0.45
CLN3-219ENST00000565778 CHRFAM7AQ494W8 412 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 C10orf128Q5T292 105 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 GLYATQ6IB77 296 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 TBPL2Q6SJ96 375 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 BPESC1Q9GZL8 116 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 NSRP1Q9H0G5 558 aaKnown RBP17.84■□□□□ 0.45
CLN3-219ENST00000565778 SMURF2Q9HAU4 748 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 CCNB1IP1Q9NPC3 277 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 ADA2Q9NZK5 511 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 EGFL7Q9UHF1 273 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 RPS6KA6Q9UK32 745 aa17.84■□□□□ 0.45
CLN3-219ENST00000565778 JMJD1CQ15652 2540 aa17.83■□□□□ 0.45
CLN3-219ENST00000565778 ABCA2Q9BZC7 2435 aa17.83■□□□□ 0.45
CLN3-219ENST00000565778 TRAV27A0A087WT01 109 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 IGHV4-61A0A0C4DH41 118 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 GMNNO75496 209 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 PRDX6P30041 224 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 GUCA1AP43080 201 aaPredicted RBP17.83■□□□□ 0.44
CLN3-219ENST00000565778 SELENOVP59797 346 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 MRPS34P82930 218 aaKnown RBP17.83■□□□□ 0.44
CLN3-219ENST00000565778 HSF2Q03933 536 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 FMODQ06828 376 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 TBC1D28Q2M2D7 210 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms