RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 C3orf14Q9HBI5 128 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF334Q9HCZ1 680 aaPredicted RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 RETNQ9HD89 108 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 SIX2Q9NPC8 291 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 MSRB1Q9NZV6 116 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ABCD2Q9UBJ2 740 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 C3orf18Q9UK00 162 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NLRC5Q86WI3 1866 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 CENPFP49454 3210 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 TRBV9A0A0B4J1U6 114 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TRBV4-1A0A0J9YWV2 114 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 A0A1W2PRD5 423 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 BCLAF3A2AJT9 711 aaKnown RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF487B1APH4 448 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 LINC01565O15544 149 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 PCDH7O60245 1069 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 MAGEC1O60732 1142 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 AP2A2O94973 939 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 VAMP5O95183 116 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 HLA-HP01893 362 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 GYPCP04921 128 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 KRT16P08779 473 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 FAM106CPP0CH98 169 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 OR1E1P30953 314 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 RPS9P46781 194 aaKnown RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 CX3CR1P49238 355 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 GAS1P54826 345 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 CDH11P55287 796 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ERVK11-1P61568 191 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 CHRNB3Q05901 458 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF33AQ06730 810 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TRAF3Q13114 568 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 PARP15Q460N3 678 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TTMPQ5BVD1 217 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 RWDD4Q6NW29 188 aaKnown RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TTC33Q6PID6 262 aaPredicted RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 PARM1Q6UWI2 310 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF730Q6ZMV8 503 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 NCCRP1Q6ZVX7 275 aaPredicted RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 PEX26Q7Z412 305 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 HSD11B1LQ7Z5J1 315 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TSEN54Q7Z6J9 526 aaKnown RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 APRG1Q8IVJ8 170 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 DNAJC22Q8N4W6 341 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TCEANCQ8N8B7 351 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 OR2T12Q8NG77 320 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 OR4D9Q8NGE8 314 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 OR4Q3Q8NH05 313 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF564Q8TBZ8 553 aaPredicted RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 RXFP2Q8WXD0 754 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 NEIL2Q969S2 332 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 MED30Q96HR3 178 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF75AQ96N20 296 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 CPXM1Q96SM3 734 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 VAT1Q99536 393 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 UTP23Q9BRU9 249 aaKnown RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 GLIPR2Q9H4G4 154 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 ELOVL2Q9NXB9 296 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 PAQR5Q9NXK6 330 aaPredicted RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 OR12D3Q9UGF7 316 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 PURGQ9UJV8 347 aaKnown RBP4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 STOML2Q9UJZ1 356 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 WIPI2Q9Y4P8 454 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 TIMM22Q9Y584 194 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 HTTP42858 3142 aa4.47□□□□□ -1.69
VPS35P1-201ENST00000563400 LRIT2A6NDA9 550 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 SIRPB1O00241 398 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNHIT1O43257 154 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 RAMP2O60895 175 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 HSBP1O75506 76 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ZMPSTE24O75844 475 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 RCBTB2O95199 551 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 C1orf105O95561 183 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 FGGP02679 453 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 SLC35E2BP0CK96 405 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 IGHV4-31P0DP07 118 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 IL9P15248 144 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 MGMTP16455 207 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ITGA2P17301 1181 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 BGNP21810 368 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 PSMB5P28074 263 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 KDELR2P33947 212 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 CBX5P45973 191 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 CXCL12P48061 93 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ELLP55199 621 aaPredicted RBP4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 RWDD2BP57060 319 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 TPI1P60174 286 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 SNRPD1P62314 119 aaKnown RBP4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 PITPNAQ00169 270 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 HTR4Q13639 388 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 GRB7Q14451 532 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 PRPSAP1Q14558 356 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF234Q14588 700 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 FNBP1LQ5T0N5 605 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 SEL1L2Q5TEA6 688 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 PRMT9Q6P2P2 845 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 WDR59Q6PJI9 974 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 TMPRSS11AQ6ZMR5 421 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 FAM183BPQ6ZVS7 135 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 APTXQ7Z2E3 356 aaKnown RBP4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms