RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 TLX3O43711 291 aaPredicted RBP13.16□□□□□ -0.3
VPS33B-205ENST00000556096 ABHD16AO95870 558 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 OPN1LWP04000 364 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 KRT8P05787 483 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 ZNF12P17014 697 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 CFL1P23528 166 aaKnown RBP13.16□□□□□ -0.3
VPS33B-205ENST00000556096 RAC1P63000 192 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 GLO1Q04760 184 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 ACSM3Q53FZ2 586 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 ABHD17BQ5VST6 288 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 RAET1LQ5VY80 246 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 HDDC2Q7Z4H3 204 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 FAM220AQ7Z4H9 259 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 CEACAM19Q7Z692 300 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 TPRA1Q86W33 373 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 FNDC8Q8TC99 324 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 RNF166Q96A37 237 aaPredicted RBP13.16□□□□□ -0.3
VPS33B-205ENST00000556096 MRPL13Q9BYD1 178 aaKnown RBP13.16□□□□□ -0.3
VPS33B-205ENST00000556096 CCDC86Q9H6F5 360 aaKnown RBP13.16□□□□□ -0.3
VPS33B-205ENST00000556096 MRPL22Q9NWU5 206 aaKnown RBP13.16□□□□□ -0.3
VPS33B-205ENST00000556096 MED29Q9NX70 200 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 ABI3Q9P2A4 366 aa13.16□□□□□ -0.3
VPS33B-205ENST00000556096 GJE1A6NN92 205 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 EIF1BO60739 113 aaKnown RBP13.15□□□□□ -0.3
VPS33B-205ENST00000556096 KHDRBS3O75525 346 aaKnown RBP13.15□□□□□ -0.3
VPS33B-205ENST00000556096 UPK3AO75631 287 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 GATBO75879 557 aaKnown RBP13.15□□□□□ -0.3
VPS33B-205ENST00000556096 GPANK1O95872 356 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 HLA-DQA2P01906 255 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 TNFSF8P32971 234 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 BIDP55957 195 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 H3F3AP84243 136 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 OC90Q02509 493 aaPredicted RBP13.15□□□□□ -0.3
VPS33B-205ENST00000556096 SRSF6Q13247 344 aaKnown RBP13.15□□□□□ -0.3
VPS33B-205ENST00000556096 ETFDHQ16134 617 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 SPANXN2Q5MJ10 180 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 TMEM225Q6GV28 225 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 UNQ9370/PRO34162Q6UXP9 181 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 TRILQ7L0X0 811 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 PARP16Q8N5Y8 322 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 PHYHIPQ92561 330 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 CEP19Q96LK0 163 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 LRFN1Q9P244 771 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 RASD1Q9Y272 281 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 COA3Q9Y2R0 106 aaPredicted RBP13.15□□□□□ -0.3
VPS33B-205ENST00000556096 CMAHPQ9Y471 501 aa13.15□□□□□ -0.3
VPS33B-205ENST00000556096 A0A0G2JMM0 328 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 A0A1W2PPB8 328 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 A0A1W2PRS3 328 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 LRRC3CA6NJW4 275 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 KIR3DP1A8MWS1 328 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 DVL2O14641 736 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 TRAF3IP2O43734 574 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-205ENST00000556096 OR8G3PP0DMU2 310 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 CD96P40200 585 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 PSMB10P40306 273 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 CASRP41180 1078 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 B3GALT5-AS1P59052 145 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 RPS11P62280 158 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS33B-205ENST00000556096 TEX30Q5JUR7 227 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 LIPNQ5VXI9 398 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 SLC18B1Q6NT16 456 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 WDFY1Q8IWB7 410 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 YIPF7Q8N8F6 280 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 ZNF454Q8N9F8 522 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 OR6X1Q8NH79 312 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 THEM6Q8WUY1 208 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 KCNE4Q8WWG9 221 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 KIAA1143Q96AT1 154 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-205ENST00000556096 RBP7Q96R05 134 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 SLC30A2Q9BRI3 323 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 DEPPQ9NTK1 212 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 KLHL9Q9P2J3 617 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 CHD8Q9HCK8 2581 aa13.14□□□□□ -0.31
VPS33B-205ENST00000556096 TRAV1-2A0A0B4J238 106 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 ZNF814B7Z6K7 855 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 LOC110117498-PIK3R3F6TDL0 507 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 PSMD9O00233 223 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 RGS5O15539 181 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 HRGP04196 525 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 LIPCP11150 499 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 MYL9P24844 172 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 CALRP27797 417 aaKnown RBP13.13□□□□□ -0.31
VPS33B-205ENST00000556096 CSNK2A1P68400 391 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-205ENST00000556096 ROM1Q03395 351 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 PCK2Q16822 640 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 ZMAT1Q5H9K5 638 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 THEM4Q5T1C6 240 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 UNQ6494/PRO21346Q6UXR6 183 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 VASH2Q86V25 355 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 SLC26A10Q8NG04 563 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 SLC25A44Q96H78 314 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-205ENST00000556096 OR8B4Q96RC9 309 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 UTP23Q9BRU9 249 aaKnown RBP13.13□□□□□ -0.31
VPS33B-205ENST00000556096 TTYH2Q9BSA4 534 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 NAA11Q9BSU3 229 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-205ENST00000556096 PPIL3Q9H2H8 161 aaKnown RBP13.13□□□□□ -0.31
VPS33B-205ENST00000556096 ZFP64Q9NPA5 681 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 KCNG2Q9UJ96 466 aa13.13□□□□□ -0.31
VPS33B-205ENST00000556096 ZNF281Q9Y2X9 895 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms