RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 WDR77Q9BQA1 342 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 COMMD4Q9H0A8 199 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ATG5Q9H1Y0 275 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 MRPL39Q9NYK5 338 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 KLHL21Q9UJP4 597 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 V9GY05 133 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 APC2O95996 2303 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 NCOA6Q14686 2063 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 A0A0A6YYJ9 748 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ITGA10O75578 1167 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 IGKV3-11P04433 115 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 CXCL3P19876 107 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ANXA7P20073 488 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 NPR2P20594 1047 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 HLA-DMAP28067 261 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 SLC6A9P48067 706 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 STARP49675 285 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 VEGFCP49767 419 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 RPS11P62280 158 aaKnown RBP eCLIP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 DCDP81605 110 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 MFGE8Q08431 387 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 CBFBQ13951 182 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 SHBQ15464 509 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 SCGB2B2Q4G0G5 96 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 Q5BKY6 102 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM255AQ5JRV8 349 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 WDR38Q5JTN6 314 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 RAET1LQ5VY80 246 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 STAC2Q6ZMT1 411 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 FAM219AQ8IW50 185 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ACBD4Q8NC06 268 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 GALNT6Q8NCL4 622 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 OR8H1Q8NGG4 311 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 OR14A16Q8NHC5 309 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 IFI44Q8TCB0 444 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 EDAQ92838 391 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 PPP1R14BQ96C90 147 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 CMBLQ96DG6 245 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 KLHL15Q96M94 604 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM138Q9NPI0 162 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 COQ3Q9NZJ6 369 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 EPHA6Q9UF33 1036 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 GPN3Q9UHW5 284 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ICAM5Q9UMF0 924 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 POLHQ9Y253 713 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 PKDREJQ9NTG1 2253 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 MED13LQ71F56 2210 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 TRAV36DV7A0A075B6V5 113 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 A0A0G2JK05 382 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 IGHV5-10-1A0A0J9YXX1 117 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 J3QRE1 110 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 K7ESF4 209 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 DHFRP00374 187 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TACSTD2P09758 323 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 PATE4P0C8F1 98 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ADRA2CP18825 462 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CDK2P24941 298 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 THBS2P35442 1172 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RBM34P42696 430 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TAS2R43P59537 309 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 SRYQ05066 204 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ASAH1Q13510 395 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 FAM69AQ5T7M9 428 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM71Q6P5X7 295 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CD200R1LQ6Q8B3 271 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ANKRD37Q7Z713 158 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 YRDCQ86U90 279 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LRRC28Q86X40 367 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 GRAMD2AQ8IUY3 354 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF687Q8N1G0 1237 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 D2HGDHQ8N465 521 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RHBDD1Q8TEB9 315 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ABHD6Q9BV23 337 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LAT2Q9GZY6 243 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CHRDQ9H2X0 955 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RYDENQ9NUL5 291 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TAS2R4Q9NYW5 299 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 EIF3KQ9UBQ5 218 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 BAIAP2Q9UQB8 552 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CEP295Q9C0D2 2601 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM269A0A1B0GVZ9 245 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 FRG2CA6NGY1 282 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 HMX3A6NHT5 357 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 F5H5K5 113 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 M0QYG6 137 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LOC400499M0QZD8 3231 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 SLC19A2O60779 497 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 WDPCPO95876 746 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 SERPINA3P01011 423 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 HPXP02790 462 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TCRBP04435 133 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 P2RX1P51575 399 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF41P51814 821 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ACTA2P62736 377 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ACTG2P63267 376 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ATXN7L3Q14CW9 347 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LIN54Q6MZP7 749 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ALKBH2Q6NS38 261 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 OGFOD3Q6PK18 319 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 COX15Q7KZN9 410 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms