RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TXNDC15Q96J42 360 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 TAAR6Q96RI8 345 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 MRPL13Q9BYD1 178 aaKnown RBP18.89■□□□□ 0.61
VPS28-212ENST00000530836 YIPF3Q9GZM5 350 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 NAA50Q9GZZ1 169 aaKnown RBP18.89■□□□□ 0.61
VPS28-212ENST00000530836 KLHL13Q9P2N7 655 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 TMEM14AQ9Y6G1 99 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 A0A1W2PQL4 384 aaPredicted RBP18.88■□□□□ 0.61
VPS28-212ENST00000530836 ZNF814B7Z6K7 855 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 NPIPA2E9PIF3 369 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 NPIPA3F8WFD2 350 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 SLC22A1O15245 554 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 MT-ND5P03915 603 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 CPEP16870 476 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 TPBGQ13641 420 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 ERI1Q8IV48 349 aaKnown RBP18.88■□□□□ 0.61
VPS28-212ENST00000530836 OR10D3Q8NH80 312 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 ZDHHC11Q9H8X9 412 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 BABAM2Q9NXR7 383 aa18.88■□□□□ 0.61
VPS28-212ENST00000530836 IGLV1-36A0A0B4J1U3 117 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 ZNF670-ZNF695F2Z2N8 137 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 PHYHO14832 338 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 TFP02787 698 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 NAA10P41227 235 aaPredicted RBP18.87■□□□□ 0.61
VPS28-212ENST00000530836 LHX2P50458 406 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 TAS2R43P59537 309 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 RPS3AP61247 264 aaKnown RBP18.87■□□□□ 0.61
VPS28-212ENST00000530836 RUNX1T1Q06455 604 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 SLC17A1Q14916 467 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 CTF1Q16619 201 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 TIGD4Q8IY51 512 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 UBQLNLQ8IYU4 475 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 SYS1Q8N2H4 156 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 SPRYD4Q8WW59 207 aaPredicted RBP18.87■□□□□ 0.61
VPS28-212ENST00000530836 UFD1Q92890 307 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 INTS14Q96SY0 518 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 TBX5Q99593 518 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 SRXN1Q9BYN0 137 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 NDUFB11Q9NX14 153 aa18.87■□□□□ 0.61
VPS28-212ENST00000530836 NCKAP5O14513 1909 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 SLC35F4A4IF30 521 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 AIREO43918 545 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 KHDRBS3O75525 346 aaKnown RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 CELA3AP09093 270 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 ZNF708P17019 499 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 PSMA1P25786 263 aaKnown RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 EIF1AXP47813 144 aaKnown RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 STARP49675 285 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 SUCLG1P53597 346 aaKnown RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 CLRN1P58418 232 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 ZNF85Q03923 595 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 GPR50Q13585 617 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 PRR30Q53SZ7 412 aaPredicted RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 GDPGP1Q6ZNW5 385 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 CREB3L2Q70SY1 520 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 KCTD20Q7Z5Y7 419 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 ZNF511Q8NB15 262 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 NOXO1Q8NFA2 376 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 OR9K2Q8NGE7 335 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 NEIL3Q8TAT5 605 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 HAVCR2Q8TDQ0 301 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 ABTB1Q969K4 478 aaPredicted RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 RERGLQ9H628 205 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 TRIM36Q9NQ86 728 aa18.86■□□□□ 0.61
VPS28-212ENST00000530836 SPENQ96T58 3664 aaKnown RBP18.86■□□□□ 0.61
VPS28-212ENST00000530836 FAM171A2A8MVW0 826 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 SMAD9O15198 467 aaKnown RBP18.85■□□□□ 0.61
VPS28-212ENST00000530836 CXCL13O43927 109 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 SELENOFO60613 162 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 RAMP1O60894 148 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CRYABP02511 175 aaKnown RBP18.85■□□□□ 0.61
VPS28-212ENST00000530836 PGA4P0DJD7 388 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 PGA3P0DJD8 388 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CTLA4P16410 223 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 PMP22Q01453 160 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 DBPQ10586 325 aaPredicted RBP18.85■□□□□ 0.61
VPS28-212ENST00000530836 FAM180AQ6UWF9 173 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 ATCAYQ86WG3 371 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 PHC2Q8IXK0 858 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 SYT14Q8NB59 555 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CPT1CQ8TCG5 803 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 SNX33Q8WV41 574 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 INTS12Q96CB8 462 aaKnown RBP18.85■□□□□ 0.61
VPS28-212ENST00000530836 SLC6A15Q9H2J7 730 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 WDR76Q9H967 626 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 KLHL9Q9P2J3 617 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 H0YC42 278 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 HLA-DQA2P01906 255 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CLDN15P56746 228 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CLDN18P56856 261 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 SSX1Q16384 188 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CDONQ4KMG0 1287 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 ABLIM2Q6H8Q1 611 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 CDC20BQ86Y33 519 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 UCN2Q96RP3 112 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 TIMP4Q99727 224 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 EMC6Q9BV81 110 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 LDAHQ9H6V9 325 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 ASF1BQ9NVP2 202 aa18.85■□□□□ 0.61
VPS28-212ENST00000530836 TRGV5A0A0B4J1U4 118 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms