RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LRRK2Q5S007 2527 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 TENM4Q6N022 2769 aa13.16□□□□□ -0.3
NUP54-213ENST00000513352 GCN1Q92616 2671 aaKnown RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 A0A096LPE4 126 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 IGKV1D-43A0A0B4J1Z2 117 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 A0A1W2PPZ6 126 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 ZAR1LA6NP61 321 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 ZNF99A8MXY4 864 aaPredicted RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 RPL36A-HNRNPH2H7BZ11 118 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 C19orf84I3L1E1 186 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 M0R129 80 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 AHCYL1O43865 530 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 CLDN1O95832 211 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 B4GALT1P15291 398 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 CRABP1P29762 137 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 CCKARP32238 428 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 GUCA1AP43080 201 aaPredicted RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 CRMP1Q14194 572 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 SNAPC1Q16533 368 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 HIST3H3Q16695 136 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 DNM1P34Q6PK57 102 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 PACRGLQ8N7B6 248 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 NPEPL1Q8NDH3 523 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 OR9Q1Q8NGQ5 310 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 OR1K1Q8NGR3 316 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 S100PBPQ96BU1 408 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 ZC3HAV1LQ96H79 300 aaKnown RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 FOXN4Q96NZ1 517 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 TSSK2Q96PF2 358 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 MBOAT4Q96T53 435 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 MED18Q9BUE0 208 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 NUAK2Q9H093 628 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 VCX3BQ9H321 246 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 SEC61A2Q9H9S3 476 aa13.15□□□□□ -0.3
NUP54-213ENST00000513352 SRA1Q9HD15 236 aaKnown RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 SMPD3Q9NY59 655 aaPredicted RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 VSX1Q9NZR4 365 aaPredicted RBP13.15□□□□□ -0.3
NUP54-213ENST00000513352 A0A1W2PR80 420 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 OR6C68A6NDL8 312 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 TUBAL3A6NHL2 446 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 FAM183AA6NL82 134 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 PRR23D1E9PI22 279 aaPredicted RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 SURF4O15260 269 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 KHDRBS3O75525 346 aaKnown RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 PRR23D2P0DMB1 279 aaPredicted RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 CTLA4P16410 223 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 CDAP32320 146 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 CAPZA2P47755 286 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 UBE2NP61088 152 aaKnown RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 SORDQ00796 357 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 DBPQ10586 325 aaPredicted RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 SGCAQ16586 387 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 HIKESHIQ53FT3 197 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 SLX4IPQ5VYV7 408 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 OR7E24Q6IFN5 339 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 ANKRD16Q6P6B7 361 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 SLC25A47Q6Q0C1 308 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 MEX3BQ6ZN04 569 aaKnown RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 ZNF555Q8NEP9 628 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 C1orf162Q8NEQ5 155 aaPredicted RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 PROKR2Q8NFJ6 384 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 OR52N5Q8NH56 324 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 FAM81AQ8TBF8 368 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 CYGBQ8WWM9 190 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 HTRA1Q92743 480 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 NMD3Q96D46 503 aaKnown RBP13.14□□□□□ -0.31
NUP54-213ENST00000513352 SNX18Q96RF0 628 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 MED20Q9H944 212 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 IMPAD1Q9NX62 359 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 NDRG3Q9UGV2 375 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 ICE1Q9Y2F5 2266 aa13.14□□□□□ -0.31
NUP54-213ENST00000513352 SH3D21A4FU49 640 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 FAM171A2A8MVW0 826 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 FARS2O95363 451 aaKnown RBP13.13□□□□□ -0.31
NUP54-213ENST00000513352 HLA-DQA2P01906 255 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 GYPBP06028 91 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 PYCR1P32322 319 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 CDC42P60953 191 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 ETFDHQ16134 617 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 GABRA6Q16445 453 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 TBRG1Q3YBR2 411 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 C10orf128Q5T292 105 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 C12orf73Q69YU5 71 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 OR2T4Q8NH00 348 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 LINC01560Q8TB33 94 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 NRG4Q8WWG1 115 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 MUCL1Q96DR8 90 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 GRIP2Q9C0E4 1043 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 TMEM38BQ9NVV0 291 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 COA3Q9Y2R0 106 aaPredicted RBP13.13□□□□□ -0.31
NUP54-213ENST00000513352 GMPPBQ9Y5P6 360 aa13.13□□□□□ -0.31
NUP54-213ENST00000513352 OR5H1A6NKK0 313 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 OR8G3PP0DMU2 310 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 CD79AP11912 226 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 KIR2DL3P43628 341 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 PCYT1AP49585 367 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 ZNF133P52736 654 aaPredicted RBP13.12□□□□□ -0.31
NUP54-213ENST00000513352 TUBA1BP68363 451 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 TUBA4AP68366 448 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms