RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815	ZNF99	A8MXY4	864 aa	Predicted RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	RPL36A-HNRNPH2	H7BZ11	118 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	SURF4	O15260	269 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	HMGN1	P05114	100 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	B4GALT1	P15291	398 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	CTLA4	P16410	223 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	ZNF3	P17036	446 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	PSMB1	P20618	241 aa	Known RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	CDA	P32320	146 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	ETFDH	Q16134	617 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	GABRA6	Q16445	453 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	SNAPC1	Q16533	368 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	HIKESHI	Q53FT3	197 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	ZNF362	Q5T0B9	420 aa	Predicted RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	SLX4IP	Q5VYV7	408 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	KLHL24	Q6TFL4	600 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	ZNF813	Q6ZN06	617 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	NPEPL1	Q8NDH3	523 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	STEAP2	Q8NFT2	490 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	OR9Q1	Q8NGQ5	310 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	OR1K1	Q8NGR3	316 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	LINC01560	Q8TB33	94 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	FNDC8	Q8TC99	324 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	ZC3HAV1L	Q96H79	300 aa	Known RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	SLC38A2	Q96QD8	506 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	HDHD5	Q9BXW7	423 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	MED20	Q9H944	212 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	SEC61A2	Q9H9S3	476 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	CMC2	Q9NRP2	79 aa		10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	SMPD3	Q9NY59	655 aa	Predicted RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	VSX1	Q9NZR4	365 aa	Predicted RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	KLF2	Q9Y5W3	355 aa	Predicted RBP	10.45	□□□□□ -0.74
CUX1-210	ENST00000497815	TENM4	Q6N022	2769 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	TUBAL3	A6NHL2	446 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	DCTN6	O00399	190 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	AHCYL1	O43865	530 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	KHDRBS3	O75525	346 aa	Known RBP	10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	GPANK1	O95872	356 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	GYPB	P06028	91 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	HOXC12	P31275	282 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	CAPZA2	P47755	286 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	SH3BGR	P55822	239 aa	Predicted RBP	10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	TUBA1B	P68363	451 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	TUBA4A	P68366	448 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	SGCA	Q16586	387 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	C10orf128	Q5T292	105 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	OTP	Q5XKR4	325 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	FBXW10	Q5XX13	1052 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	PLBD1	Q6P4A8	553 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	ANKRD16	Q6P6B7	361 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	DNM1P34	Q6PK57	102 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	SLC25A47	Q6Q0C1	308 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	TUBA1A	Q71U36	451 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	PACRGL	Q8N7B6	248 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	OR51L1	Q8NGJ5	315 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	OR52N5	Q8NH56	324 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	FOXB1	Q99853	325 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	MED18	Q9BUE0	208 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	GRIP2	Q9C0E4	1043 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	VCX	Q9H320	206 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	TMEM38B	Q9NVV0	291 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	COA3	Q9Y2R0	106 aa	Predicted RBP	10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	UGT2A1	Q9Y4X1	527 aa		10.44	□□□□□ -0.74
CUX1-210	ENST00000497815	MYO18B	Q8IUG5	2567 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	SH3D21	A4FU49	640 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	OR5H1	A6NKK0	313 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	PRR23D1	E9PI22	279 aa	Predicted RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	DLGAP1	O14490	977 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	PRKY	O43930	277 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	PRR23D2	P0DMB1	279 aa	Predicted RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	CLU	P10909	449 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	PAICS	P22234	425 aa	Known RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	COL8A1	P27658	744 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	CRABP1	P29762	137 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	PYCR1	P32322	319 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	ZNF133	P52736	654 aa	Predicted RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	UBE2N	P61088	152 aa	Known RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	SORD	Q00796	357 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	TBRG1	Q3YBR2	411 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	C12orf73	Q69YU5	71 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	OR7E24	Q6IFN5	339 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	MEX3B	Q6ZN04	569 aa	Known RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	C22orf34	Q6ZV56	151 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	CPO	Q8IVL8	374 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	OR6V1	Q8N148	313 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	LRRC18	Q8N456	261 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	SLC22A24	Q8N4F4	322 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	TCEANC	Q8N8B7	351 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	ZNF555	Q8NEP9	628 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	C1orf162	Q8NEQ5	155 aa	Predicted RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	PROKR2	Q8NFJ6	384 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	FAM81A	Q8TBF8	368 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	CYGB	Q8WWM9	190 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	BCL2L2	Q92843	193 aa	Predicted RBP	10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	MUS81	Q96NY9	551 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	WFIKKN1	Q96NZ8	548 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	SNX18	Q96RF0	628 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	IL4I1	Q96RQ9	567 aa		10.43	□□□□□ -0.74
CUX1-210	ENST00000497815	DDO	Q99489	341 aa		10.43	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms