RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 CRABP1P29762 137 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 POLR2IP36954 125 aaKnown RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 PEX19P40855 299 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 GUCA1AP43080 201 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 SNAPC1Q16533 368 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 C10orf128Q5T292 105 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 CYB561A3Q8NBI2 242 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 SLC37A3Q8NCC5 494 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 NPEPL1Q8NDH3 523 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 C1orf162Q8NEQ5 155 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 OR1K1Q8NGR3 316 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 OTULINQ96BN8 352 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 S100PBPQ96BU1 408 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 RDH12Q96NR8 316 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 FOXB1Q99853 325 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 NUAK2Q9H093 628 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 VCX3BQ9H321 246 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 FN3KQ9H479 309 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 NPDC1Q9NQX5 325 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 A0A1W2PPL8 197 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 OR6C68A6NDL8 312 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 C19orf84I3L1E1 186 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 SURF4O15260 269 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 SEC14L2O76054 403 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 CTLA4P16410 223 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 CENPAP49450 140 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF133P52736 654 aaPredicted RBP12.79□□□□□ -0.36
BRCA1-223ENST00000494123 CRMP1Q14194 572 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 GABRA6Q16445 453 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 SLX4IPQ5VYV7 408 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 ANKRD16Q6P6B7 361 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 SLC25A47Q6Q0C1 308 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 KLHL24Q6TFL4 600 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF813Q6ZN06 617 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF555Q8NEP9 628 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 NMD3Q96D46 503 aaKnown RBP12.79□□□□□ -0.36
BRCA1-223ENST00000494123 USB1Q9BQ65 265 aaKnown RBP12.79□□□□□ -0.36
BRCA1-223ENST00000494123 SRA1Q9HD15 236 aaKnown RBP12.79□□□□□ -0.36
BRCA1-223ENST00000494123 NDRG3Q9UGV2 375 aa12.79□□□□□ -0.36
BRCA1-223ENST00000494123 A0A096LPE4 126 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 IGKV1D-43A0A0B4J1Z2 117 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 A0A1W2PPZ6 126 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 TUBAL3A6NHL2 446 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 PRR23D1E9PI22 279 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-223ENST00000494123 KHDRBS3O75525 346 aaKnown RBP12.78□□□□□ -0.36
BRCA1-223ENST00000494123 CLDN1O95832 211 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 PRR23D2P0DMB1 279 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-223ENST00000494123 B4GALT1P15291 398 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 PPP3CBP16298 524 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 CCKARP32238 428 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 CDC42P60953 191 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 SNTB1Q13884 538 aaKnown RBP12.78□□□□□ -0.36
BRCA1-223ENST00000494123 HIKESHIQ53FT3 197 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 C17orf78Q8N4C9 275 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 OR2T4Q8NH00 348 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 TSSK2Q96PF2 358 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 MBOAT4Q96T53 435 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 MED18Q9BUE0 208 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 GRIP2Q9C0E4 1043 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 OR10A4Q9H209 315 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 SEC61A2Q9H9S3 476 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 TMEM38BQ9NVV0 291 aa12.78□□□□□ -0.36
BRCA1-223ENST00000494123 FAM183AA6NL82 134 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 FARS2O95363 451 aaKnown RBP12.77□□□□□ -0.36
BRCA1-223ENST00000494123 CAPZA2P47755 286 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 UBE2NP61088 152 aaKnown RBP12.77□□□□□ -0.36
BRCA1-223ENST00000494123 TBRG1Q3YBR2 411 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF362Q5T0B9 420 aaPredicted RBP12.77□□□□□ -0.36
BRCA1-223ENST00000494123 C12orf73Q69YU5 71 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 OR6V1Q8N148 313 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 PROKR2Q8NFJ6 384 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 OR9Q1Q8NGQ5 310 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 NRG4Q8WWG1 115 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 MUCL1Q96DR8 90 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 MUS81Q96NY9 551 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 IMPAD1Q9NX62 359 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 B9D1Q9UPM9 204 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 COA3Q9Y2R0 106 aaPredicted RBP12.77□□□□□ -0.36
BRCA1-223ENST00000494123 GMPPBQ9Y5P6 360 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 FKBP7Q9Y680 259 aa12.77□□□□□ -0.36
BRCA1-223ENST00000494123 OR5H1A6NKK0 313 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 OR8G3PP0DMU2 310 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 NPR2P20594 1047 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 CDAP32320 146 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 PTDSS1P48651 473 aaKnown RBP12.77□□□□□ -0.37
BRCA1-223ENST00000494123 ETFDHQ16134 617 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 SGCAQ16586 387 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 TIMM23BQ5SRD1 257 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 ALKBH2Q6NS38 261 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 PLBD1Q6P4A8 553 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 MEX3BQ6ZN04 569 aaKnown RBP12.77□□□□□ -0.37
BRCA1-223ENST00000494123 P2RY8Q86VZ1 359 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 GLB1L2Q8IW92 636 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 SLC22A24Q8N4F4 322 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 TCEANCQ8N8B7 351 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 OR52N5Q8NH56 324 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 LINC01560Q8TB33 94 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 FAM81AQ8TBF8 368 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 HSD17B8Q92506 261 aa12.77□□□□□ -0.37
BRCA1-223ENST00000494123 BCL2L2Q92843 193 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms