RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 F6UB75 175 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 DYNC1I1O14576 645 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 XKRYO14609 159 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 MRPS12O15235 138 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CLIC3O95833 236 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 TSPAN13O95857 204 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 C6orf47O95873 294 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 PABPC4LP0CB38 370 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 TROVE2P10155 538 aaKnown RBP eCLIP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ADRB3P13945 408 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 FOLR1P15328 257 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 HOXA9P31269 272 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 SERPINB5P36952 375 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 NSG1P42857 185 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CCNHP51946 323 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 NCBP2P52298 156 aaKnown RBP eCLIP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ACLYP53396 1101 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CDH6P55285 790 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 IDI1Q13907 227 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 HSP90AB3PQ58FF7 597 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 XKR7Q5GH72 579 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 COA6Q5JTJ3 125 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ARMC12Q5T9G4 340 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 PRAMEF20Q5VT98 475 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC8B1Q6J4K2 584 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 LYPD2Q6UXB3 125 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CCDC73Q6ZRK6 1079 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CTAGE6Q86UF2 777 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 EID2Q8N6I1 236 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CEP112Q8N8E3 955 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 FBXL13Q8NEE6 735 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 DUSP18Q8NEJ0 188 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 OR7G2Q8NG99 324 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 RHEBL1Q8TAI7 183 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 MARCH1Q8TCQ1 289 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ACTRT1Q8TDG2 376 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CXorf40AQ8TE69 158 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ELMO1Q92556 727 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 KIFAP3Q92845 792 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CCDC126Q96EE4 140 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 SH3GL3Q99963 347 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ILKAPQ9H0C8 392 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 RACGAP1Q9H0H5 632 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 RPF2Q9H7B2 306 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 ANKRA2Q9H9E1 313 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 NTN4Q9HB63 628 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 FGF20Q9NP95 211 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 DCAF16Q9NXF7 216 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 RBAKQ9NYW8 714 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 LSM7Q9UK45 103 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 KIAA1257Q9ULG3 409 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CNTNAP1P78357 1384 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 MTCL1Q9Y4B5 1905 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 OR2AG2A6NM03 316 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 HIDE1A8MVS5 230 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 C11orf94C9JXX5 98 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 TMX2-CTNND1H3BSU7 103 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 RAB29O14966 203 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 KMOO15229 486 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 CLOCKO15516 846 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 CD5LO43866 347 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ICOSLGO75144 302 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 WBP4O75554 376 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 BGLAPP02818 100 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ANXA5P08758 320 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 SMIM10L1P0DMW3 83 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF24P17028 368 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 AK4P27144 223 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 NAA10P41227 235 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 CXCL5P42830 114 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 TMED10P49755 219 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 SSR4P51571 173 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF136P52737 540 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 YWHAGP61981 247 aaKnown RBP eCLIP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ACTA2P62736 377 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ACTG2P63267 376 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ACTC1P68032 377 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ACTA1P68133 377 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 HMGCS1Q01581 520 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 PAX5Q02548 391 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ECH1Q13011 328 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 MADCAM1Q13477 382 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 PON3Q15166 354 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 MRPL23Q16540 153 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 TTLL9Q3SXZ7 439 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 LY6G6FQ5SQ64 297 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 RAET1LQ5VY80 246 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 CARD17Q5XLA6 110 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ANKRD26P1Q6NSI1 321 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 H2AFVQ71UI9 128 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 PEX26Q7Z412 305 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 TTC5Q8N0Z6 440 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 PDIK1LQ8N165 341 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 GTPBP8Q8N3Z3 284 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 LIX1Q8N485 282 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 MREGQ8N565 214 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ACMSDQ8TDX5 336 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 SMIM10Q96HG1 83 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 PKNOX2Q96KN3 472 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms