RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 SPEF1Q9Y4P9 236 aa12.36□□□□□ -0.43
VAMP4-203ENST00000474047 F8P00451 2351 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 ZNF503-AS2A6NEH8 195 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 OVOL3O00110 214 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 KRT36O76013 467 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 SLC2A10O95528 541 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 CD8AP01732 235 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 CD14P08571 375 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 PATE4P0C8F1 98 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 PAX1P15863 534 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 OMPP47874 163 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 DNAL1Q4LDG9 190 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 LCN8Q6JVE9 175 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 LRRC18Q8N456 261 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 LRRC75AQ8NAA5 344 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 HTRA1Q92743 480 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 ASB9Q96DX5 294 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 FBXO17Q96EF6 278 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 CLPTM1LQ96KA5 538 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 Q96MF0 132 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 ZNF570Q96NI8 536 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 TSPAN32Q96QS1 320 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 KCNK17Q96T54 332 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 GRIP2Q9C0E4 1043 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 SEC61A2Q9H9S3 476 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 SMURF2Q9HAU4 748 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 PMF1-BGLAPU3KQ54 211 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 USF3Q68DE3 2245 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 ITPR3Q14573 2671 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 MED13LQ71F56 2210 aa12.35□□□□□ -0.43
VAMP4-203ENST00000474047 NPR2P20594 1047 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 CALCRP30988 508 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 MS4A2Q01362 244 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 GALK2Q01415 458 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 PLP2Q04941 152 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 FMODQ06828 376 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 FHL1Q13642 323 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 RAB39AQ14964 217 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 IQCCQ4KMZ1 466 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 C10orf128Q5T292 105 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 ARIH2OSQ8N7S6 290 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 BDH2Q9BUT1 245 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 TMUB1Q9BVT8 246 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 CACNG6Q9BXT2 260 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 MAGIXQ9H6Y5 334 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 CCNB1IP1Q9NPC3 277 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 CA10Q9NS85 328 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 IL20RAQ9UHF4 553 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 SIGLEC7Q9Y286 467 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 ADAM18Q9Y3Q7 739 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 IGHV2OR16-5A0A0B4J2B6 119 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 A0A1W2PPL8 197 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 TNFRSF11BO00300 401 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 MGRN1O60291 552 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 PTP4A3O75365 173 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 PTHP01270 115 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 CDAP32320 146 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 SERPINF1P36955 418 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 LIMS1P48059 325 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 TRAP1Q12931 704 aaKnown RBP12.34□□□□□ -0.43
VAMP4-203ENST00000474047 DAG1Q14118 895 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 RAB35Q15286 201 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 NRN1LQ496H8 165 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 SMARCD3Q6STE5 483 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 MYPOPQ86VE0 399 aaPredicted RBP12.34□□□□□ -0.43
VAMP4-203ENST00000474047 ZNF519Q8TB69 540 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 GNPDA2Q8TDQ7 276 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 MS4A3Q96HJ5 214 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 Q96M85 177 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 SIAEQ9HAT2 523 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 BARX1Q9HBU1 254 aaPredicted RBP12.34□□□□□ -0.43
VAMP4-203ENST00000474047 NOX3Q9HBY0 568 aa12.34□□□□□ -0.43
VAMP4-203ENST00000474047 PLCE1Q9P212 2302 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 IQCMA0A1B0GVH7 501 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 TCRBV5S2A0A599 114 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 H7C1C5 153 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 RPS6KA3P51812 740 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 RIPPLY3P57055 190 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 SNRPD2P62316 118 aaKnown RBP12.33□□□□□ -0.44
VAMP4-203ENST00000474047 LCN6P62502 163 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 MRPS34P82930 218 aaKnown RBP12.33□□□□□ -0.44
VAMP4-203ENST00000474047 HSF2Q03933 536 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 GPR139Q6DWJ6 353 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 KRT80Q6KB66 452 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 DPY19L2P2Q6ZN68 376 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 LINC00471Q8N535 108 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 CLDN22Q8N7P3 220 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 FANK1Q8TC84 345 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 BTBD10Q9BSF8 475 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 FUZQ9BT04 418 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 LRMDAQ9H2I8 198 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 RERGLQ9H628 205 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 ZNF224Q9NZL3 707 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 IER3IP1Q9Y5U9 82 aa12.33□□□□□ -0.44
VAMP4-203ENST00000474047 TEX13CA0A0J9YWL9 993 aa12.32□□□□□ -0.44
VAMP4-203ENST00000474047 SOCS2O14508 198 aa12.32□□□□□ -0.44
VAMP4-203ENST00000474047 SERPINA5P05154 406 aa12.32□□□□□ -0.44
VAMP4-203ENST00000474047 OR4A8P0C604 315 aa12.32□□□□□ -0.44
VAMP4-203ENST00000474047 ZNF14P17017 642 aaPredicted RBP12.32□□□□□ -0.44
VAMP4-203ENST00000474047 SDHAP31040 664 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms