RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SLC16A14Q7RTX9 510 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 HDDC2Q7Z4H3 204 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 MEX3DQ86XN8 651 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC15A3Q8IY34 581 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 LRRC18Q8N456 261 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC30A7Q8NEW0 376 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 MRPL13Q9BYD1 178 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 OR51B6Q9H340 312 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 TMEM160Q9NX00 188 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 RHCGQ9UBD6 479 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC7A8Q9UHI5 535 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 M0R233 179 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 CXCR6O00574 342 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 NME4O00746 187 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 SYNGR3O43761 229 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 CCDC22O60826 627 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 SLC2A10O95528 541 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 IFNW1P05000 195 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 FAM157BP0CG42 384 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 CCL2P13500 99 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 TCN1P20061 433 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 FUT4P22083 530 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 ALDH3B1P43353 468 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 CD47Q08722 323 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 MAD2L1BPQ15013 274 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 FXNQ16595 210 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 HIST3H3Q16695 136 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 SLC36A2Q495M3 483 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 ALG10Q5BKT4 473 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 IGFN1Q86VF2 1251 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 LRP11Q86VZ4 500 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 TREML1Q86YW5 311 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF540Q8NDQ6 660 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 RBM15BQ8NDT2 890 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 UBASH3BQ8TF42 649 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 LIPHQ8WWY8 451 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 HDAC2Q92769 488 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 BPIFA2Q96DR5 249 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 SHARPINQ9H0F6 387 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 CHODLQ9H9P2 273 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 CDH20Q9HBT6 801 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 MYEF2Q9P2K5 600 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 REV1Q9UBZ9 1251 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 SNX13Q9Y5W8 968 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 SVEP1Q4LDE5 3571 aa13.52□□□□□ -0.25
CCDC88B-205ENST00000472524 LRP5LA4QPB2 252 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 CENPBD1B2RD01 187 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 LYNX1G3V0Z9 82 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 LMX1BO60663 402 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 TSPAN19P0C672 248 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 LYNX1P0DP58 116 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 SAGP10523 405 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF23P17027 643 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 CDAP32320 146 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 EVX1P49640 407 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 NUDT2P50583 147 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 FMODQ06828 376 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 ARMC4Q5T2S8 1044 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 IL17RELQ6ZVW7 336 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 NRMQ8IXM6 262 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 OFCC1Q8IZS5 231 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 PAQR4Q8N4S7 273 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 GEMIN6Q8WXD5 167 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 NSMAFQ92636 917 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 MSI2Q96DH6 328 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 SEPHS2Q99611 448 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 HOPXQ9BPY8 73 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 FNDC11Q9BVV2 318 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 TXNIPQ9H3M7 391 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 STX18Q9P2W9 335 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 LPAR3Q9UBY5 353 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 DUSP13Q9UII6 198 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 KCNS2Q9ULS6 477 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 HIF3AQ9Y2N7 669 aa13.51□□□□□ -0.25
CCDC88B-205ENST00000472524 TRAV27A0A087WT01 109 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 IGKV1D-43A0A0B4J1Z2 117 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 LOC100289279A0A1B0GTE1 492 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 A0A1W2PPW3 197 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 SERPINA1P01009 418 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 MAKP20794 623 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 IGFBP5P24593 272 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 GSK3BP49841 420 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 SEC24CP53992 1094 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 HSF2Q03933 536 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 PLP2Q04941 152 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 TRAM2Q15035 370 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 TBC1D28Q2M2D7 210 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 ALKBH6Q3KRA9 238 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 IFI44LQ53G44 452 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 C10orf128Q5T292 105 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 FAM166AQ6J272 317 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 RGS7BPQ6MZT1 257 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 FKBP9P1Q75LS8 142 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 CBLL1Q75N03 491 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 DPPA2Q7Z7J5 298 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 ZNF786Q8N393 782 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 ICA1LQ8NDH6 482 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 FAM162AQ96A26 154 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 HSH2DQ96JZ2 352 aa13.5□□□□□ -0.25
CCDC88B-205ENST00000472524 ELAC2Q9BQ52 826 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms