RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 DEFA3P59666 94 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 TMPPEQ6ZT21 453 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 NCCRP1Q6ZVX7 275 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-207ENST00000436724 SPATC1Q76KD6 591 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 SYS1Q8N2H4 156 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 KCTD7Q96MP8 289 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 IP6K3Q96PC2 410 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 TBC1D24Q9ULP9 559 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 DCHS1Q96JQ0 3298 aa18.89■□□□□ 0.61
PTPRF-207ENST00000436724 A0A1W2PNV4 684 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 A6NL46 340 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 PLPP2O43688 288 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 FGF9P31371 208 aaPredicted RBP18.88■□□□□ 0.61
PTPRF-207ENST00000436724 TMEM225Q6GV28 225 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 NHLRC1Q6VVB1 395 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 CDC20BQ86Y33 519 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 ADAD1Q96M93 576 aaKnown RBP18.88■□□□□ 0.61
PTPRF-207ENST00000436724 SNX18Q96RF0 628 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 FANCFQ9NPI8 374 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 ST6GALNAC2Q9UJ37 374 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 IGKV1D-43A0A0B4J1Z2 117 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 SLC35F4A4IF30 521 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 ARGFXA6NJG6 315 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 RFC3P40938 356 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 GPR50Q13585 617 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 MEP1BQ16820 701 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 ZMAT1Q5H9K5 638 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 LAX1Q8IWV1 398 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 CELF2-AS1Q8N7Q2 184 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 IL17RDQ8NFM7 739 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 OR14L1PQ8NHC6 308 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 PGLYRP3Q96LB9 341 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 FER1L6-AS2Q96M78 137 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 WDFY2Q96P53 400 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 INTS14Q96SY0 518 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 KCNK17Q96T54 332 aa18.88■□□□□ 0.61
PTPRF-207ENST00000436724 UTP23Q9BRU9 249 aaKnown RBP18.88■□□□□ 0.61
PTPRF-207ENST00000436724 MRPL22Q9NWU5 206 aaKnown RBP18.88■□□□□ 0.61
PTPRF-207ENST00000436724 COA3Q9Y2R0 106 aaPredicted RBP18.88■□□□□ 0.61
PTPRF-207ENST00000436724 SHISA3A0PJX4 238 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 MPZL1O95297 269 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 PRKAR1AP10644 381 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 SRD5A2P31213 254 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 B3GALT5-AS1P59052 145 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 FOXO1Q12778 655 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 DMKNQ6E0U4 476 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-207ENST00000436724 OR8H2Q8N162 312 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 OR13C5Q8NGS8 318 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 SLC25A46Q96AG3 418 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 AMELYQ99218 206 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 PIGQQ9BRB3 760 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 RYDENQ9NUL5 291 aaKnown RBP18.87■□□□□ 0.61
PTPRF-207ENST00000436724 KCNG2Q9UJ96 466 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 GSTK1Q9Y2Q3 226 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 LAMA5O15230 3695 aa18.87■□□□□ 0.61
PTPRF-207ENST00000436724 IGHV3-15A0A0B4J1V0 119 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 IQCMA0A1B0GVH7 501 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 A6NIZ1 184 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 TRAPPC6AO75865 159 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 OR8G3PP0DMU2 310 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 CNR1P21554 472 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 FKBP2P26885 142 aaKnown RBP18.86■□□□□ 0.61
PTPRF-207ENST00000436724 TAS2R43P59537 309 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 RAP1BP61224 184 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 RAP1AP62834 184 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 OR1C1Q15619 314 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 KCNJ8Q15842 424 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 ZNF79Q15937 498 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 ZNF684Q5T5D7 378 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 UEVLDQ8IX04 471 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 CHAC2Q8WUX2 184 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 GHSRQ92847 366 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 DLL3Q9NYJ7 618 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 LAMP5Q9UJQ1 280 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 NPIPB13A6NJU9 1138 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 NPIPB4C9JG80 1138 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 NKX2-8O15522 239 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 IL1AP01583 271 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 ZNF17P17021 662 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 GBX2P52951 348 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-207ENST00000436724 CAV3P56539 151 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 SIRPAP78324 504 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 WIPI1Q5MNZ9 446 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-207ENST00000436724 FAM27D1Q5T7N8 215 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 LRRC69Q6ZNQ3 347 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 AKAP14Q86UN6 197 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 THEM6Q8WUY1 208 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 PPIL3Q9H2H8 161 aaKnown RBP18.86■□□□□ 0.61
PTPRF-207ENST00000436724 KLHL13Q9P2N7 655 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 PLEKHB1Q9UF11 243 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-207ENST00000436724 AKAP13Q12802 2813 aa18.86■□□□□ 0.61
PTPRF-207ENST00000436724 A0A0J9YW62 118 aa18.85■□□□□ 0.61
PTPRF-207ENST00000436724 AQP7P3A6NL99 342 aa18.85■□□□□ 0.61
PTPRF-207ENST00000436724 ZNF593O00488 134 aaPredicted RBP18.85■□□□□ 0.61
PTPRF-207ENST00000436724 TNFSF11O14788 317 aa18.85■□□□□ 0.61
PTPRF-207ENST00000436724 TRAF3IP2O43734 574 aaPredicted RBP18.85■□□□□ 0.61
PTPRF-207ENST00000436724 APOA1P02647 267 aa18.85■□□□□ 0.61
PTPRF-207ENST00000436724 LIPCP11150 499 aa18.85■□□□□ 0.61
PTPRF-207ENST00000436724 CASRP41180 1078 aa18.85■□□□□ 0.61
PTPRF-207ENST00000436724 CLDN20P56880 219 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms