RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 THSD7BQ9C0I4 1608 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 UHRF1BP1Q6BDS2 1440 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 XKRYO14609 159 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 RAB29O14966 203 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 EEDO75530 441 aaKnown RBP4.24□□□□□ -1.73
USP54-206ENST00000433394 EIF3GO75821 320 aaKnown RBP eCLIP4.24□□□□□ -1.73
USP54-206ENST00000433394 FGFR1OPO95684 399 aaKnown RBP4.24□□□□□ -1.73
USP54-206ENST00000433394 ANXA5P08758 320 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 CSF3P09919 207 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 FUT3P21217 361 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 HMOX2P30519 316 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 CSNK1DP48730 415 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 CCNHP51946 323 aaPredicted RBP4.24□□□□□ -1.73
USP54-206ENST00000433394 NUP107P57740 925 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 RAB10P61026 200 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 HERPUD1Q15011 391 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 WDR43Q15061 677 aaKnown RBP eCLIP4.24□□□□□ -1.73
USP54-206ENST00000433394 ZNF79Q15937 498 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 CCDC14Q49A88 953 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 ZBED5Q49AG3 693 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 LHFPL3Q86UP9 236 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 PIANPQ8IYJ0 282 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 PUSL1Q8N0Z8 303 aaKnown RBP4.24□□□□□ -1.73
USP54-206ENST00000433394 GTPBP8Q8N3Z3 284 aaPredicted RBP4.24□□□□□ -1.73
USP54-206ENST00000433394 RNF175Q8N4F7 328 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 DCAF4L2Q8NA75 395 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 NDRG1Q92597 394 aaKnown RBP4.24□□□□□ -1.73
USP54-206ENST00000433394 SH3GL3Q99963 347 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 RARRES2Q99969 163 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 OSBPL10Q9BXB5 764 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 PDFQ9HBH1 243 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 KIAA1257Q9ULG3 409 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 AGRNO00468 2067 aa4.24□□□□□ -1.73
USP54-206ENST00000433394 SYNRGQ9UMZ2 1314 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 NOS1P29475 1434 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 YEATS2Q9ULM3 1422 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 PHF3Q92576 2039 aaKnown RBP4.23□□□□□ -1.73
USP54-206ENST00000433394 PSMB11A5LHX3 300 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 FGGP02679 453 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 GKN3PP0CG01 181 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 CHTF8P0CG12 524 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 ANXA8P13928 327 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 SLC1A1P43005 524 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 SSR4P51571 173 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 GPX6P59796 221 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 ADARB1P78563 741 aaKnown RBP4.23□□□□□ -1.73
USP54-206ENST00000433394 KIAA0087Q14695 138 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 CHRNA6Q15825 494 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 RFX4Q33E94 735 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 ANXA8L1Q5VT79 327 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 NIPA1Q7RTP0 329 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 SLC16A14Q7RTX9 510 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 OR4A4PQ8NGN8 299 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 OR2G3Q8NGZ4 309 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 OR6X1Q8NH79 312 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 MCOLN3Q8TDD5 553 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 FRAT1Q92837 279 aaPredicted RBP4.23□□□□□ -1.73
USP54-206ENST00000433394 KIFAP3Q92845 792 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 PACSIN2Q9UNF0 486 aaPredicted RBP4.23□□□□□ -1.73
USP54-206ENST00000433394 GOLT1BQ9Y3E0 138 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 PIK3C2BO00750 1634 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 LAMC1P11047 1609 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 MSH6P52701 1360 aa4.23□□□□□ -1.73
USP54-206ENST00000433394 ZFYVE9O95405 1425 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 NPATQ14207 1427 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 SPATA31E1Q6ZUB1 1445 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 IGLV3-22A0A075B6J6 115 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 A0A0G2JN53 185 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 FAM231BA6NCW3 169 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 USP27XA6NNY8 438 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 KLLNB2CW77 178 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 SIRPB1O00241 398 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 ZNF43P17038 809 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 GTF2E2P29084 291 aaKnown RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 NPBWR2P48146 333 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 CX3CR1P49238 355 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 TMED10P49755 219 aaKnown RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 GBE1Q04446 702 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 CLINT1Q14677 625 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 TWF2Q6IBS0 349 aaKnown RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 TTC23LQ6PF05 361 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 CERS6Q6ZMG9 384 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 BIVMQ86UB2 503 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 TMEM61Q8N0U2 210 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 FBXL16Q8N461 479 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 C20orf203Q8NBC4 194 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 SLC7A13Q8TCU3 470 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 ACMSDQ8TDX5 336 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 GEMIN6Q8WXD5 167 aaKnown RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 RPUSD4Q96CM3 377 aaKnown RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 CLMPQ9H6B4 373 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 LYARQ9NX58 379 aaKnown RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 ZNF256Q9Y2P7 627 aaPredicted RBP4.22□□□□□ -1.73
USP54-206ENST00000433394 MYOM2P54296 1465 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 PLA2R1Q13018 1463 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 PREX1Q8TCU6 1659 aa4.22□□□□□ -1.73
USP54-206ENST00000433394 CACNG3O60359 315 aa4.21□□□□□ -1.74
USP54-206ENST00000433394 MYL2P10916 166 aa4.21□□□□□ -1.74
USP54-206ENST00000433394 AK4P27144 223 aaPredicted RBP4.21□□□□□ -1.74
USP54-206ENST00000433394 CASQ1P31415 396 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms