RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 DHHO43323 396 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SERPINA2P20848 420 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 CD163Q86VB7 1156 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 PTOV1Q86YD1 416 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 FAM83FQ8NEG4 500 aaPredicted RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 OR52N5Q8NH56 324 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 MUL1Q969V5 352 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SLC25A44Q96H78 314 aaPredicted RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 PIGLQ9Y2B2 252 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 BDKRB2P30411 391 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 ZNF620Q6ZNG0 422 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 BHLHA15Q7RTS1 189 aaPredicted RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 TMEM200AQ86VY9 491 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 HSD17B8Q92506 261 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 RFT1Q96AA3 541 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 BCL7BQ9BQE9 202 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 TEX46H3BTG2 121 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 NOS1APO75052 506 aaPredicted RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 NXPH2O95156 264 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 IL3RAP26951 378 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 MECP2P51608 486 aaKnown RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 PAQR6Q6TCH4 344 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SARGQ9BW04 601 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 TTTY12Q9BZ98 90 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 GABARAPL1Q9H0R8 117 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 MMP27Q9H306 513 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 CLDN24A6NM45 220 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SHISA8B8ZZ34 492 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CLPXO76031 633 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 C1QAP02745 245 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 TP53P04637 393 aaPredicted RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 ALDOBP05062 364 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 YES1P07947 543 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 PSKH1P11801 424 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 RBMXP38159 391 aaKnown RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 ACTBP60709 375 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 ACTG1P63261 375 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SULF2Q8IWU5 870 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CCDC71LQ8N9Z2 235 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 VSTM2LQ96N03 204 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 TBCCD1Q9NVR7 557 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 OSGIN2Q9Y236 505 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 PCYT1BQ9Y5K3 369 aaPredicted RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 A0A087WUU8 490 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 A0A0B4J2E0 115 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 A0A1B0GX12 115 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 ATXN7O15265 892 aaPredicted RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 SELENOFO60613 162 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 ACTL6BO94805 426 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 ZNF91Q05481 1191 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 MLLT11Q13015 90 aaPredicted RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 ALKBH1Q13686 389 aaKnown RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 MEP1BQ16820 701 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 GSG1Q2KHT4 349 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 TMEM99Q8N816 258 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 LIPHQ8WWY8 451 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 H1FXQ92522 213 aaKnown RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 FOXB1Q99853 325 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 NIPSNAP1Q9BPW8 284 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SCNM1Q9BWG6 230 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 LOC101059948A0A1B0GTJ6 334 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 FUCA1P04066 466 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CD97P48960 835 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 WNT3P56703 355 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SNRPGP62308 76 aaKnown RBP9.18□□□□□ -0.94
USP54-201ENST00000339859 ZNF74Q16587 644 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 TMEM108Q6UXF1 575 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 GGHQ92820 318 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SLAMF6Q96DU3 332 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 HRASLS5Q96KN8 279 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 TAS2R8Q9NYW2 309 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 LOC100509620A0A075B734 347 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 H7C1Q1 480 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 P2RY10O00398 339 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 AHCYL1O43865 530 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CASP3P42574 277 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 ERVK-16P61578 105 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 NTRK2Q16620 822 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 GCNT2Q8N0V5 402 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CSNK2A3Q8NEV1 391 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 COPZ2Q9P299 210 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 PCDHGA3Q9Y5H0 932 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 DPPA5A6NC42 116 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 MPPED1O15442 326 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SPOCK1Q08629 439 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 PRR18Q8N4B5 295 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CLDN22Q8N7P3 220 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SLC7A13Q8TCU3 470 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 EXTL1Q92935 676 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 CMC2Q9NRP2 79 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 ZNF69Q9UC07 566 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 V9GY05 133 aa9.18□□□□□ -0.94
USP54-201ENST00000339859 SOCS6O14544 535 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 TOR1AO14656 332 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 ACOT8O14734 319 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 SCGB1D2O95969 90 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 ELFN2Q5R3F8 820 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 TRILQ7L0X0 811 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 GPR119Q8TDV5 335 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 SLC29A1Q99808 456 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms